Miyakogusa Predicted Gene
- Lj4g3v1024160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1024160.1 Non Chatacterized Hit- tr|B9FGE5|B9FGE5_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,57.14,2e-18,RNA
recognition motif,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; RRM,RNA recognitio,CUFF.48277.1
(452 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 90 2e-18
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 58 1e-08
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 57 3e-08
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 57 3e-08
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 57 3e-08
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 54 3e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 53 4e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 53 4e-07
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 53 4e-07
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 52 6e-07
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 51 1e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 51 1e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 51 1e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 50 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 2e-06
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 50 3e-06
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 50 3e-06
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 3e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 4e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 5e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 5e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 5e-06
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-06
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 58/74 (78%)
Query: 369 QRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKE 428
+R+ +KE EIFVG LD+ A+EEDL+KVF +GEV EVR+ KN T K+KG AF++FA E
Sbjct: 207 ERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVE 266
Query: 429 HAKKALSEMKNPVV 442
AK+A+ E+K+P++
Sbjct: 267 QAKRAVKELKSPMI 280
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
E+F+GGL RD EEDLR + + IGE+ EVRL K+ + +KGYAFV F K+ A+KA+ E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 437 MKNPVVCFSSFDCSF 451
+ + + CS
Sbjct: 177 LHSKEFKGKTIRCSL 191
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
E+F+GGL RD EEDLR + + IGE+ EVRL K+ + +KGYAFV F K+ A+KA+ E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 437 MKNPVVCFSSFDCSF 451
+ + + CS
Sbjct: 177 LHSKEFKGKTIRCSL 191
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
E+F+GGL RD EEDLR + + IGE+ EVRL K+ + +KGYAFV F K+ A+KA+ E
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 437 MKNPVVCFSSFDCSF 451
+ + + CS
Sbjct: 157 LHSKEFKGKTIRCSL 171
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
E+F+GGL RD EEDLR + + IGE+ EVRL K+ + +KGYAFV F K+ A+KA+ E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 437 M 437
+
Sbjct: 177 L 177
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Query: 366 LAKQRKIKKE-----------HEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTN 414
+A+QR+ + E +IFVGGL + + +R+ F++ GE+VE + + +T
Sbjct: 1 MAQQRQFQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTG 60
Query: 415 KNKGYAFVKFANKEHAKKALSEMKNPVV 442
++KGY FV F E A +A M NPV+
Sbjct: 61 RSKGYGFVTFKEAEAAMRACQNM-NPVI 87
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 360 HMQLEALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGY 419
H++L AL E+++GG+ DATE DL+ IGEV EVR+ + + KGY
Sbjct: 81 HVELLALPPHGS-----EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGY 135
Query: 420 AFVKFANKEHAKKALSEMKNPVVCFSSFDCS 450
AFV F +K+ A +A+ + N CS
Sbjct: 136 AFVTFRSKDLAAEAIDTLNNTDFRGKRIKCS 166
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 360 HMQLEALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGY 419
H++L AL E+++GG+ DATE DL+ IGEV EVR+ + + KGY
Sbjct: 81 HVELLALPPHGS-----EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGY 135
Query: 420 AFVKFANKEHAKKALSEMKNPVVCFSSFDCS 450
AFV F +K+ A +A+ + N CS
Sbjct: 136 AFVTFRSKDLAAEAIDTLNNTDFRGKRIKCS 166
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
IFVGGLD D TEEDL + F GEVV V++ KG FV+FAN++ A++A+ +
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNL 382
Query: 438 KNPVV 442
V+
Sbjct: 383 NGTVI 387
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVGGL + +++R+ F + GE++E + + +T K+KGY FV F + + A +A+++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 437 MKNPVV 442
NPV+
Sbjct: 78 -PNPVI 82
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVG + R ATEE++R F++ G V+EV L K+ T + +G FVK+A + A +A+
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 437 MKN 439
+ N
Sbjct: 106 LHN 108
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVG + R ATEE++R F++ G V+EV L K+ T + +G FVK+A + A +A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 437 MKN 439
+ N
Sbjct: 181 LHN 183
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVG + R ATEE++R F++ G V+EV L K+ T + +G FVK+A + A +A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 437 MKN 439
+ N
Sbjct: 181 LHN 183
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVGGL + +++R+ F++ GE++E + + +T K+KGY FV F + A +A+++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 437 MKNPVV 442
NPV+
Sbjct: 78 -PNPVI 82
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVGGL + +++R+ F++ GE++E + + +T K+KGY FV F + A +A+++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 437 MKNPVV 442
NPV+
Sbjct: 78 -PNPVI 82
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++F+GGL TE+ L + F + G+VVE ++ + ++++KG+ FV FA+ + A+KAL E
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 437 M 437
Sbjct: 95 F 95
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 374 KEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKA 433
K ++F+ GL +E+ LR F+ GE+VEV++ + + ++KGYAF+++ +E A A
Sbjct: 280 KTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTA 339
Query: 434 LSEMKNPVV 442
L EM ++
Sbjct: 340 LKEMNGKII 348
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FVGGL + E LR+ F++ GE++E + + +T ++KGY FV F + E A++A ++
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 437 MKNPVV 442
P++
Sbjct: 85 -PTPII 89
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 359 GHMQLEALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKG 418
G+M A + IFVGGLD T+EDL++ F GE+V V++ KG
Sbjct: 289 GYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKG 342
Query: 419 YAFVKFANKEHAKKALSEMKNPVV 442
FV+F N+ +A++AL ++ V+
Sbjct: 343 CGFVQFVNRPNAEEALEKLNGTVI 366
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
IFVGGLD T+EDL++ F GE+V V++ KG FV+F N+ +A++AL ++
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 359
Query: 438 KNPVV 442
V+
Sbjct: 360 NGTVI 364
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
IFVGG+D D +EDLR+ F + GEVV V++ KG FV+FA+++ A+ A+ +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRKSAEDAIESL 376
Query: 438 KNPVV 442
V+
Sbjct: 377 NGTVI 381
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 375 EHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
+++FVGG+ ++ +EE L++ F R G V+E + K T K +G+ FV+FAN KAL
Sbjct: 5 RYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL 64
Query: 435 SE 436
+
Sbjct: 65 RD 66
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 373 KKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKK 432
K+ IFVGGL + T+ DL + F R G++++ ++ T +++G+ F+ FA++ +
Sbjct: 4 KEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Query: 433 ALSEM 437
++ EM
Sbjct: 64 SIREM 68
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKA 433
+FVG + DATEE LR++ +G VV RL + T K KGY F ++ ++E A A
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
++FVGGL + + LR F++ G++VE + + S+ ++KGY FV F + E A+KA
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
++FVGGL + + LR F++ G++VE + + S+ ++KGY FV F + E A+KA
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++F+GG+ D EE L++ F GEV+E + K+ +T + +G+ FV FA+ A+ ++E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 437 MKN 439
N
Sbjct: 67 KHN 69
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++F+GG+ D EE L++ F GEV+E + K+ +T + +G+ FV FA+ A+ ++E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 437 MKN 439
N
Sbjct: 67 KHN 69
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 375 EHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
E IFVGGL D TE L F R G++ E ++ T + +G+ F+ F ++ A A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 435 SEM 437
M
Sbjct: 71 KHM 73
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 375 EHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
E IFVGGL D TE L F R G++ E ++ T + +G+ F+ F ++ A A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 435 SEM 437
M
Sbjct: 71 KHM 73
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
++VG LD T+ L + F + G+VV VR+ ++ +T ++ GY +V +A + A +AL+E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
++VG LD T+ L + F + G+VV VR+ ++ +T ++ GY +V +A + A +AL+E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 40/60 (66%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
++VG LD + T+ L F + +VV VR+ ++++TN + GY +V ++N + A+KA+ ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
++FV L T++ LR++F G++ E RL ++S T + KG+ F+ F +++ A+KAL
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 437 MKNPVV 442
+ +V
Sbjct: 68 LDGKIV 73
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 365 ALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKF 424
+L + + ++F+GG+ E+ LR+ F + GEVV+ R+ + T +++G+ FV F
Sbjct: 29 SLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
Query: 425 ANKEHAKKALSEM 437
+ E A A+ +
Sbjct: 89 TSSEAASSAIQAL 101
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 365 ALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKF 424
++ + + +IFVGG+ E LR+ F + GEVV+ ++ + T +++G+AFV F
Sbjct: 23 SMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
Query: 425 ANKEHAKKAL 434
+ E A A+
Sbjct: 83 TSTEEASNAM 92
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
+IFV GL + T E L VF+ GE+ E + + +T K KG+ FV F ++ AK+AL E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 437 MKNPVV 442
K ++
Sbjct: 165 PKKRIL 170
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 377 EIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSE 436
+IFV GL + T E L VF+ GE+ E + + +T K KG+ FV F ++ AK+AL E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 437 MKNPVV 442
K ++
Sbjct: 165 PKKRIL 170
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 365 ALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKF 424
A Q K K +IFVGG+ TE++L+ F + G VVE ++ ++ TN+++G+ FV F
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Query: 425 ANKEHAKKALSE 436
++E + LS+
Sbjct: 158 DSEEVVDELLSK 169
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 375 EHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
E+ FVGGL +EDL++ F + G+V++ ++ + + +++G+ FV F +++ + A+
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 435 SEM 437
EM
Sbjct: 65 EEM 67
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
+FV GL R T E L+ F G++V+ R+ + + ++KG+ FV +A E A+KA +EM
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL--- 434
IFV G D T+E+L+ F+ GE+ E + + T + KGY FV F ++ A++AL
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 435 -SEMKNPVV 442
M N +V
Sbjct: 470 EKRMYNRIV 478
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 371 KIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHA 430
K K ++VGG+ D TE DL VF + GE+V+V L ++ T K+KG+AF+ + ++
Sbjct: 31 KYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST 90
Query: 431 KKALSEMKNPVV 442
A+ + +V
Sbjct: 91 ILAVDNLNGALV 102
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 375 EHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
E+ FVGGL +EDL++ F + G+V++ ++ + + +++G+ FV F +++ + A+
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 435 SEM 437
EM
Sbjct: 65 EEM 67
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 375 EHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKAL 434
E+ FVGGL +EDL++ F + G+V++ ++ + + +++G+ FV F +++ + A+
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 435 SEM 437
EM
Sbjct: 65 EEM 67
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 378 IFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEM 437
+FV G+ +TEE L + F + G+V++V + + + KG+A+V F++KE A+KAL E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 438 KNPVV 442
+V
Sbjct: 83 NAQLV 87
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 369 QRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKE 428
Q K K +IFVGG+ TE++L+ F + G VVE ++ ++ TN+++G+ FV F ++E
Sbjct: 102 QSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Query: 429 HAKKALSE 436
+ LS+
Sbjct: 162 VVDELLSK 169