Miyakogusa Predicted Gene

Lj4g3v1022130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1022130.1 CUFF.48274.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51140.1 | Symbols:  | Protein of unknown function (DUF3353) ...   281   4e-76
AT5G23040.1 | Symbols: CDF1 | Protein of unknown function (DUF33...   137   5e-33

>AT3G51140.1 | Symbols:  | Protein of unknown function (DUF3353) |
           chr3:18998182-18999437 FORWARD LENGTH=278
          Length = 278

 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/218 (62%), Positives = 164/218 (75%), Gaps = 6/218 (2%)

Query: 41  TMCLRVERTSFSSPVLKGNR------RQIQLVRSAMDASFGDMANDSTAVFPRINVKDPY 94
           T+  ++   + + PVLK +R      R+  ++  AM ASFGDMA+DS A+FPRINVKDPY
Sbjct: 33  TVLSKLNNRNSAWPVLKSSRLALPTQRRNAMITRAMSASFGDMADDSAAIFPRINVKDPY 92

Query: 95  KRLGISKEASEDEIQAARNFLIQQYAGHKPSMDSIESAHDKIIMQKFYDRRNPKIDFKKK 154
           KRLGIS+ ASEDEIQ ARNFLIQQYAGHKPS+D+IESAHDKIIMQKF++R+NPKID  KK
Sbjct: 93  KRLGISRMASEDEIQGARNFLIQQYAGHKPSVDAIESAHDKIIMQKFHERKNPKIDISKK 152

Query: 155 MREVNQSKFLQAIRGRFQTPSTKFIIKTSXXXXXXXXXXXXXPTEEGPTLQVALSLIATI 214
           +R+V QSK +  +  RFQTP    ++KT+             PTEEGPTLQV LSLIAT 
Sbjct: 153 VRQVRQSKVVNFVFERFQTPPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATF 212

Query: 215 YFIHDRLKSKIRAFLYGVGAFIFSWLLGTFLMVSVIPP 252
           YFIH RL+ K+  FLYG GAFIFSWL+GTFLMVSVIPP
Sbjct: 213 YFIHQRLQKKLWTFLYGAGAFIFSWLVGTFLMVSVIPP 250


>AT5G23040.1 | Symbols: CDF1 | Protein of unknown function (DUF3353)
           | chr5:7729465-7730930 REVERSE LENGTH=258
          Length = 258

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 114/193 (59%), Gaps = 7/193 (3%)

Query: 61  RQIQLVRSAMDASFGDMANDSTAVFPRINVKDPYKRLGISKEASEDEIQAARNFLIQQYA 120
           R  + V+  +D+S+G     +   FPR  V DPYKRLG+S  ASE+EI A+RNFL+QQYA
Sbjct: 41  RSFKTVKCTVDSSYGG----NVPTFPRTRVWDPYKRLGVSPYASEEEIWASRNFLLQQYA 96

Query: 121 GHKPSMDSIESAHDKIIMQKFYDRRNPKIDFKKKM-REVNQS-KFLQAIRGRFQTPSTKF 178
           GH+ S +SIE A +K++M  F  R+  KI+ K K+ ++V +S  +L+A+    + P    
Sbjct: 97  GHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFVEMPPMDT 156

Query: 179 IIKTSXXXXXXXXXXXXXPTEEGPTLQVALSLIATIYFIHDRLKSKIRAFLYGVGAFIFS 238
           I +                 E GP  QVA+SL A +YF++++ KS  RA L G+GA +  
Sbjct: 157 IFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALVAG 216

Query: 239 WLLGTFLMVSVIP 251
           W  G+ L++ +IP
Sbjct: 217 WFCGS-LIIPMIP 228