Miyakogusa Predicted Gene
- Lj4g3v0998960.4
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0998960.4 Non Chatacterized Hit- tr|J3LZW8|J3LZW8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,39.02,4e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.48259.4
(153 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G63430.2 | Symbols: | Leucine-rich repeat protein kinase fam... 194 2e-50
AT1G63430.1 | Symbols: | Leucine-rich repeat protein kinase fam... 194 3e-50
AT5G41180.1 | Symbols: | leucine-rich repeat transmembrane prot... 166 7e-42
AT4G18640.1 | Symbols: MRH1 | Leucine-rich repeat protein kinase... 67 4e-12
AT5G58540.3 | Symbols: | Protein kinase superfamily protein | c... 65 2e-11
AT5G45840.1 | Symbols: | Leucine-rich repeat protein kinase fam... 63 7e-11
AT5G45840.2 | Symbols: | Leucine-rich repeat protein kinase fam... 63 7e-11
AT5G58540.2 | Symbols: | Protein kinase superfamily protein | c... 63 8e-11
AT5G58540.1 | Symbols: | Protein kinase superfamily protein | c... 63 8e-11
AT2G40270.2 | Symbols: | Protein kinase family protein | chr2:1... 60 5e-10
AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:1... 60 5e-10
AT5G07150.1 | Symbols: | Leucine-rich repeat protein kinase fam... 59 2e-09
AT3G56050.2 | Symbols: | Protein kinase family protein | chr3:2... 57 6e-09
AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:2... 57 6e-09
>AT1G63430.2 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr1:23522896-23526451 FORWARD LENGTH=688
Length = 688
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 2/149 (1%)
Query: 2 QCAGASPAKSQ--PVVNPNHQPTEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAA 59
QCA A K+ P P HQ + + KHH +SKP WLLA+EIV G+MVG L LVA+ +A
Sbjct: 252 QCANAQLVKTHGSPSAAPKHQSAQMVAKHHRASKPKWLLALEIVTGSMVGLLLLVALFSA 311
Query: 60 FQRCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPD 119
R N +S ++IPWKKS+S+K+ TVY+D EMLKDV R +RQ+LEVACEDFSNIIG S D
Sbjct: 312 VHRWNNRSTLIIPWKKSSSEKEKFTVYVDSEMLKDVSRLTRQELEVACEDFSNIIGLSAD 371
Query: 120 SVVYKGTMKGGPEIGVISLCIREEQWTGW 148
S +YKGT+KGG EI VISLC++EE WTG+
Sbjct: 372 SQIYKGTLKGGSEIAVISLCVKEEDWTGY 400
>AT1G63430.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr1:23522896-23526451 FORWARD LENGTH=664
Length = 664
Score = 194 bits (492), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 2/149 (1%)
Query: 2 QCAGASPAKSQ--PVVNPNHQPTEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAA 59
QCA A K+ P P HQ + + KHH +SKP WLLA+EIV G+MVG L LVA+ +A
Sbjct: 252 QCANAQLVKTHGSPSAAPKHQSAQMVAKHHRASKPKWLLALEIVTGSMVGLLLLVALFSA 311
Query: 60 FQRCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPD 119
R N +S ++IPWKKS+S+K+ TVY+D EMLKDV R +RQ+LEVACEDFSNIIG S D
Sbjct: 312 VHRWNNRSTLIIPWKKSSSEKEKFTVYVDSEMLKDVSRLTRQELEVACEDFSNIIGLSAD 371
Query: 120 SVVYKGTMKGGPEIGVISLCIREEQWTGW 148
S +YKGT+KGG EI VISLC++EE WTG+
Sbjct: 372 SQIYKGTLKGGSEIAVISLCVKEEDWTGY 400
>AT5G41180.1 | Symbols: | leucine-rich repeat transmembrane protein
kinase family protein | chr5:16484045-16487228 FORWARD
LENGTH=664
Length = 664
Score = 166 bits (419), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 100/147 (68%)
Query: 2 QCAGASPAKSQPVVNPNHQPTEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAAFQ 61
C K +P+ K H +S+ +WL EIV G+ VG LFLV + +A
Sbjct: 242 NCMKTMDVKQRPLSECARLAVTVAKKKHRASRQTWLRNFEIVTGSSVGLLFLVVMFSACS 301
Query: 62 RCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDSV 121
C K ++++PWKKSAS+K+ TVY+D EMLKDV RY+RQ+LEVACEDFSNII SS +S
Sbjct: 302 LCKIKRSLIVPWKKSASEKEKFTVYVDSEMLKDVSRYTRQELEVACEDFSNIIDSSAESQ 361
Query: 122 VYKGTMKGGPEIGVISLCIREEQWTGW 148
+YKGT+KGG EI VISLC++EE WTG+
Sbjct: 362 IYKGTIKGGTEIAVISLCVKEENWTGY 388
>AT4G18640.1 | Symbols: MRH1 | Leucine-rich repeat protein kinase
family protein | chr4:10260481-10263577 FORWARD
LENGTH=678
Length = 678
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 15/138 (10%)
Query: 11 SQPVVNPNHQPTEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKKSAIV 70
+ P ++ N QP ++ K SK WL + I + + VG L +VAV+ C K++
Sbjct: 299 TSPDISKN-QPQDN--KQSKGSKHVWLYVV-IAVASFVGLLIIVAVIFF---CRKRAVKS 351
Query: 71 I-PWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKG 129
I PWK S + + + V + +R +LE ACEDFSNII + VYKGT+
Sbjct: 352 IGPWKTGLSGQ------LQKAFVTGVPKLNRSELETACEDFSNIIETFDGYTVYKGTLSS 405
Query: 130 GPEIGVISLCIRE-EQWT 146
G EI V S I E ++WT
Sbjct: 406 GVEIAVASTAIAESKEWT 423
>AT5G58540.3 | Symbols: | Protein kinase superfamily protein |
chr5:23663906-23665182 FORWARD LENGTH=341
Length = 341
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 47 MVGSLFLV--AVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLE 104
+VG +F V A++ F +K I PW S +D +++ DV R +L+
Sbjct: 5 IVGGVFTVSVALIIIFLILTRKIPIK-PWTNSGQLRD--------DLITDVPRLQLSELQ 55
Query: 105 VACEDFSNIIGSSPDSVVYKGTMKGGPEIGVISLC 139
ACEDFSN+IGS D +YKGT+ G EI V+S+
Sbjct: 56 AACEDFSNVIGSFSDGTIYKGTLSTGAEIAVVSIV 90
>AT5G45840.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr5:18594080-18597221 REVERSE LENGTH=668
Length = 668
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 33 KPSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYIDPEML 92
K WL + I + V L +VAV+ F++ KS + PWK S + + +
Sbjct: 308 KDVWLYVV-IGVAAFVAMLIIVAVIFFFRKRAVKS--IGPWKTGLSGQ------LQKAFV 358
Query: 93 KDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIGVISLCIRE-EQWT 146
V + +R +LE ACEDFSNII + VYKGT+ G EI V S I E +WT
Sbjct: 359 TGVPKLNRSELETACEDFSNIIEAFDGYTVYKGTLSSGVEIAVASTAILETREWT 413
>AT5G45840.2 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr5:18594080-18597221 REVERSE LENGTH=706
Length = 706
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 33 KPSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYIDPEML 92
K WL + I + V L +VAV+ F++ KS + PWK S + + +
Sbjct: 346 KDVWLYVV-IGVAAFVAMLIIVAVIFFFRKRAVKS--IGPWKTGLSGQ------LQKAFV 396
Query: 93 KDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIGVISLCIRE-EQWT 146
V + +R +LE ACEDFSNII + VYKGT+ G EI V S I E +WT
Sbjct: 397 TGVPKLNRSELETACEDFSNIIEAFDGYTVYKGTLSSGVEIAVASTAILETREWT 451
>AT5G58540.2 | Symbols: | Protein kinase superfamily protein |
chr5:23663400-23665182 FORWARD LENGTH=481
Length = 481
Score = 62.8 bits (151), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 30 GSSK--PSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYI 87
G++K P + + IV G S+ L+ + R + PW S +D
Sbjct: 131 GTTKKSPKVYMIVGIVGGVFTVSVALIIIFLILTR----KIPIKPWTNSGQLRD------ 180
Query: 88 DPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIGVISL 138
+++ DV R +L+ ACEDFSN+IGS D +YKGT+ G EI V+S+
Sbjct: 181 --DLITDVPRLQLSELQAACEDFSNVIGSFSDGTIYKGTLSTGAEIAVVSI 229
>AT5G58540.1 | Symbols: | Protein kinase superfamily protein |
chr5:23663400-23665182 FORWARD LENGTH=484
Length = 484
Score = 62.8 bits (151), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 30 GSSK--PSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYI 87
G++K P + + IV G S+ L+ + R + PW S +D
Sbjct: 134 GTTKKSPKVYMIVGIVGGVFTVSVALIIIFLILTR----KIPIKPWTNSGQLRD------ 183
Query: 88 DPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIGVISL 138
+++ DV R +L+ ACEDFSN+IGS D +YKGT+ G EI V+S+
Sbjct: 184 --DLITDVPRLQLSELQAACEDFSNVIGSFSDGTIYKGTLSTGAEIAVVSI 232
>AT2G40270.2 | Symbols: | Protein kinase family protein |
chr2:16822136-16824327 REVERSE LENGTH=482
Length = 482
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Query: 7 SPAKSQPVVNPNHQPTEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKK 66
SP+ S P+ N +P++ SS P +V+G + G+ FL+ V K
Sbjct: 110 SPSPSAPLAN------SPIPRNSHSSVP-------LVVGCVGGAFFLLLVATGLYFFTSK 156
Query: 67 SA-IVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKG 125
+ V PW+ S + +LK R ++E ACEDFSN+IGS P ++KG
Sbjct: 157 AGKTVNPWRTGLSGQLQKVFVTGIPVLK------RSEIEAACEDFSNVIGSCPIGKLFKG 210
Query: 126 TMKGGPEIGVISLC 139
T+ G EI V S
Sbjct: 211 TLSSGVEIAVASFA 224
>AT2G40270.1 | Symbols: | Protein kinase family protein |
chr2:16822136-16824327 REVERSE LENGTH=489
Length = 489
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Query: 7 SPAKSQPVVNPNHQPTEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAAFQRCNKK 66
SP+ S P+ N +P++ SS P +V+G + G+ FL+ V K
Sbjct: 117 SPSPSAPLAN------SPIPRNSHSSVP-------LVVGCVGGAFFLLLVATGLYFFTSK 163
Query: 67 SA-IVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDSVVYKG 125
+ V PW+ S + +LK R ++E ACEDFSN+IGS P ++KG
Sbjct: 164 AGKTVNPWRTGLSGQLQKVFVTGIPVLK------RSEIEAACEDFSNVIGSCPIGKLFKG 217
Query: 126 TMKGGPEIGVISLC 139
T+ G EI V S
Sbjct: 218 TLSSGVEIAVASFA 231
>AT5G07150.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr5:2215820-2217983 FORWARD LENGTH=553
Length = 553
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 53 LVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRYSRQDLEVACEDFSN 112
+ A++A F N+K ++ PW ++ S V + V + +LE ACEDFSN
Sbjct: 244 MAALVAFFFLWNQKVKLIKPWGETGSSGQLQDV-----VTTGVPKLKLAELETACEDFSN 298
Query: 113 IIGS-SPDSVVYKGTMKGGPEIGVISLC 139
IIGS S D+ +YKGT+ G EI V+++
Sbjct: 299 IIGSTSSDATIYKGTLSTGSEIAVLAVA 326
>AT3G56050.2 | Symbols: | Protein kinase family protein |
chr3:20798322-20800706 REVERSE LENGTH=499
Length = 499
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 40 IEIVMGTMVGSLF-LVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRY 98
I IV G + G++F L+ F +K V PW+ S + + + V +
Sbjct: 145 IPIVAGCIAGAVFILLLATGVFFFKSKAGKSVNPWRTGLSGQ------LQKVFITGVPKL 198
Query: 99 SRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEI 133
R ++E ACEDFSN+IGS P ++KGT+ G EI
Sbjct: 199 KRSEIEAACEDFSNVIGSCPIGTLFKGTLSSGVEI 233
>AT3G56050.1 | Symbols: | Protein kinase family protein |
chr3:20798322-20800706 REVERSE LENGTH=499
Length = 499
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 40 IEIVMGTMVGSLF-LVAVLAAFQRCNKKSAIVIPWKKSASQKDHMTVYIDPEMLKDVRRY 98
I IV G + G++F L+ F +K V PW+ S + + + V +
Sbjct: 145 IPIVAGCIAGAVFILLLATGVFFFKSKAGKSVNPWRTGLSGQ------LQKVFITGVPKL 198
Query: 99 SRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEI 133
R ++E ACEDFSN+IGS P ++KGT+ G EI
Sbjct: 199 KRSEIEAACEDFSNVIGSCPIGTLFKGTLSSGVEI 233