Miyakogusa Predicted Gene

Lj4g3v0998950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0998950.1 Non Chatacterized Hit- tr|K3YVX1|K3YVX1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018417,71.83,3e-19,Ribosomal_L7_L12,Ribosomal protein L7/L12;
ClpS-like,Ribosomal protein L7/L12, C-terminal/adaptor pr,CUFF.48256.1
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36420.1 | Symbols:  | Ribosomal protein L12 family protein |...   147   5e-36
AT1G70190.2 | Symbols:  | Ribosomal protein L7/L12, oligomerisat...   107   6e-24
AT1G70190.1 | Symbols:  | Ribosomal protein L7/L12, oligomerisat...   107   6e-24
AT3G06040.3 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...   104   3e-23
AT3G06040.2 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...   104   3e-23
AT3G06040.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...   104   3e-23
AT4G37660.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...   101   4e-22
AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A ...    72   3e-13
AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3:...    72   3e-13
AT2G03130.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...    62   2e-10
AT3G27840.1 | Symbols: RPL12-B | ribosomal protein L12-B | chr3:...    62   2e-10

>AT4G36420.1 | Symbols:  | Ribosomal protein L12 family protein |
           chr4:17203718-17204257 REVERSE LENGTH=179
          Length = 179

 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 97/142 (68%), Gaps = 5/142 (3%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXXX 115
           E VS IV+EL+ LTLLE MDL E++R+K  I+ELP+   M+PGM + G            
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPG-----SGASKSA 97

Query: 116 XXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGV 175
                       TAFDV L A+DA SKIKVIKEVRT T+LGLKEAKDLVEK PT+LKKGV
Sbjct: 98  GGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGV 157

Query: 176 TKEEAEAIIAKLKDVGAKASME 197
           +KEEAE II KLK VGAK +ME
Sbjct: 158 SKEEAEKIIEKLKAVGAKVAME 179


>AT1G70190.2 | Symbols:  | Ribosomal protein L7/L12,
           oligomerisation;Ribosomal protein L7/L12,
           C-terminal/adaptor protein ClpS-like |
           chr1:26430616-26431242 FORWARD LENGTH=208
          Length = 208

 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 90/142 (63%), Gaps = 2/142 (1%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXXX 115
           ++V  +VDE++ LTLLE+ +L  ++ +KKG+ ELP   +M PG G               
Sbjct: 69  DRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGV--GVGGGGGMVS 126

Query: 116 XXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGV 175
                       T F++KL++F+A++KIK+IKE+R+FT LGLKEAK LVEK P +LK G+
Sbjct: 127 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 186

Query: 176 TKEEAEAIIAKLKDVGAKASME 197
           +KEE E I+ KLK +GAK  +E
Sbjct: 187 SKEEGEKILEKLKALGAKVVLE 208


>AT1G70190.1 | Symbols:  | Ribosomal protein L7/L12,
           oligomerisation;Ribosomal protein L7/L12,
           C-terminal/adaptor protein ClpS-like |
           chr1:26430616-26431242 FORWARD LENGTH=208
          Length = 208

 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 90/142 (63%), Gaps = 2/142 (1%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXXX 115
           ++V  +VDE++ LTLLE+ +L  ++ +KKG+ ELP   +M PG G               
Sbjct: 69  DRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGV--GVGGGGGMVS 126

Query: 116 XXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGV 175
                       T F++KL++F+A++KIK+IKE+R+FT LGLKEAK LVEK P +LK G+
Sbjct: 127 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 186

Query: 176 TKEEAEAIIAKLKDVGAKASME 197
           +KEE E I+ KLK +GAK  +E
Sbjct: 187 SKEEGEKILEKLKALGAKVVLE 208


>AT3G06040.3 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr3:1824516-1825076 REVERSE LENGTH=186
          Length = 186

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 61/70 (87%)

Query: 128 TAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAEAIIAKL 187
           TAFDVKL+ F+A+ KIKVIKEVRTFTSLGLKEAK+LVEKVP +LK+GVTKEEA  IIAK+
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKI 176

Query: 188 KDVGAKASME 197
           K VG  A ME
Sbjct: 177 KAVGGIAVME 186


>AT3G06040.2 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr3:1824516-1825076 REVERSE LENGTH=186
          Length = 186

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 61/70 (87%)

Query: 128 TAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAEAIIAKL 187
           TAFDVKL+ F+A+ KIKVIKEVRTFTSLGLKEAK+LVEKVP +LK+GVTKEEA  IIAK+
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKI 176

Query: 188 KDVGAKASME 197
           K VG  A ME
Sbjct: 177 KAVGGIAVME 186


>AT3G06040.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr3:1824516-1825076 REVERSE LENGTH=186
          Length = 186

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 61/70 (87%)

Query: 128 TAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAEAIIAKL 187
           TAFDVKL+ F+A+ KIKVIKEVRTFTSLGLKEAK+LVEKVP +LK+GVTKEEA  IIAK+
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKI 176

Query: 188 KDVGAKASME 197
           K VG  A ME
Sbjct: 177 KAVGGIAVME 186


>AT4G37660.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr4:17695543-17696046 FORWARD LENGTH=167
          Length = 167

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 84/152 (55%), Gaps = 18/152 (11%)

Query: 50  CSTATPE----KVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLP 105
           C+ A+PE    K+  I D+L  L  +E+ D   +   K G+N    A+ +   +G     
Sbjct: 30  CAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVAVTGSVG----- 84

Query: 106 XXXXXXXXXXXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVE 165
                                 T FDVKL+ F+AASKIKVIKE+R FT LGLKEAK LVE
Sbjct: 85  ---------DASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVE 135

Query: 166 KVPTVLKKGVTKEEAEAIIAKLKDVGAKASME 197
           K P ++K G+TKEEAE I+ KLK VGA  ++E
Sbjct: 136 KAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167


>AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A |
           chr3:10318576-10319151 FORWARD LENGTH=191
          Length = 191

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 55  PEKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXX 114
           PEK+  I  E++ LTL E   LV+ +++K G++ L +A                      
Sbjct: 63  PEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAA--------------AVAA 108

Query: 115 XXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKG 174
                        T FDV ++   ++S+I VIK VR  TSL LKEAK+L+E +P   K+G
Sbjct: 109 PADGGAAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEG 168

Query: 175 VTKEEAEAIIAKLKDVGAKASM 196
           +TK+EAE     L++ GAK S+
Sbjct: 169 ITKDEAEEAKKTLEEAGAKVSI 190


>AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C |
           chr3:10324905-10325468 FORWARD LENGTH=187
          Length = 187

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 55  PEKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXX 114
           PEK+  I  E++ LTL E   LV+ +++K G++ L +A                      
Sbjct: 59  PEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAA--------------AVAA 104

Query: 115 XXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKG 174
                        T FDV ++   ++S+I VIK VR  TSL LKEAK+L+E +P   K+G
Sbjct: 105 PADGGAAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEG 164

Query: 175 VTKEEAEAIIAKLKDVGAKASM 196
           +TK+EAE     L++ GAK S+
Sbjct: 165 ITKDEAEEAKKTLEEAGAKVSI 186


>AT2G03130.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr2:940744-941076 FORWARD LENGTH=110
          Length = 110

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 53/70 (75%)

Query: 128 TAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAEAIIAKL 187
           T F+VKL++F+A +KIK+IKEVR    +GLKEA  LV K PTVLK G++KEE E ++ KL
Sbjct: 22  TVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLSKEEGEEVVEKL 81

Query: 188 KDVGAKASME 197
             +GA+A ++
Sbjct: 82  NALGAEAVLQ 91


>AT3G27840.1 | Symbols: RPL12-B | ribosomal protein L12-B |
           chr3:10323354-10323935 FORWARD LENGTH=193
          Length = 193

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 13  LTQNPKFPSSPSIPRFAPXXXXXXXXXXXCRSLFARNCSTA-TPEKVSAIVDELTGLTLL 71
           L     FPS P    F              R+++    S   TP+K+  I  E++ LTL 
Sbjct: 21  LASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLE 80

Query: 72  EVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXXXXXXXXXXXXXXXTAFD 131
           E   LV+ +++K G++ L  A                                   T FD
Sbjct: 81  ESRILVDYVQDKFGVSILFSAPAAA-------------ALPPPLDNGGATASVERQTTFD 127

Query: 132 VKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAEAIIAKLKDVG 191
           V ++     ++I VI  +R  TSL L E+K+L+E  P   K+GVTK+EAE    +L++ G
Sbjct: 128 VVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAG 187

Query: 192 AKASM 196
           AK S+
Sbjct: 188 AKVSI 192