Miyakogusa Predicted Gene

Lj4g3v0998890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0998890.1 Non Chatacterized Hit- tr|A5C710|A5C710_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,43.61,0.00000000000002,seg,NULL; DUF2351,Ubiquitin-conjugating
enzyme E2C-binding protein,CUFF.48255.1
         (554 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26750.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ubiquitin-...   327   1e-89

>AT3G26750.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Ubiquitin-conjugating enzyme E2C-binding protein
           (InterPro:IPR019193); Has 26 Blast hits to 25 proteins
           in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE
           LENGTH=526
          Length = 526

 Score =  327 bits (838), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/492 (39%), Positives = 273/492 (55%), Gaps = 60/492 (12%)

Query: 68  PIPARVLLDADAPPTFRALSDHIEVKXXXXXXXXXXXXXXXXXXXXXR----PLPMDSDV 123
           PIP RVLLD ++P  F+AL DHIEV+                     R    PL M  D+
Sbjct: 88  PIP-RVLLDTESPVNFKALDDHIEVRLVLLLPVDHPLVSDFNLVTDSREKSAPLVMGYDL 146

Query: 124 ENLASHGEVDFYCRTCAFKLTKHPLRNFVEMPSANWREVADNWFGACCCSFGGVSEKLVL 183
           + L+  G V FYCR+C+ +LTK  L +F EMPS NWRE ADNWFG CCCSFGG+SEK+V+
Sbjct: 147 KTLSLMGGVHFYCRSCSNRLTKKELLDFSEMPSINWRESADNWFGTCCCSFGGISEKMVV 206

Query: 184 RYVNSHTCAPGICLLSPASVILCKDDLVECNLHAEGCGQRECGSKADNLXXXXXXXXXKA 243
           +Y NS+TC+ G+CLLS  +V+L KDDLVEC L  +G  + E  S   +L         + 
Sbjct: 207 KYTNSYTCSSGLCLLSATTVLLSKDDLVECILSEKGGTEVEFES---SLALSCDVGVVEP 263

Query: 244 SFGLNEERTSTCADAGEVACAFEDKLRLVHPENEKLSMNFRGEGNDFSHSCTDSNGAEDV 303
              ++E    +    GE  C                     G+ ++    C D       
Sbjct: 264 GSRISEGNAESHESGGENVC---------------------GQVDESKTRCIDK------ 296

Query: 304 ANTPSCCAHSMGIIGDEDGEHHLSGTARKTETIEIRENQKPLLNGFLEDVFMARLSNLSK 363
           A+ P CC H          +   S  + + E  ++  ++K LL+GFLEDVFMA+ SN+SK
Sbjct: 297 ASLPGCCVH----------DSPDSNESVQLEEKKLTLDKKFLLDGFLEDVFMAKASNVSK 346

Query: 364 DIDWHEFTCPQCMSLLGAYPCCEGY--APVDGGVRLFKCYISTCVPVGGSEDIFSEYTMD 421
           +++W EF CP+C S LGAYP   G    P+DGGVRLFKCYIST    G S D+F +YT++
Sbjct: 347 NVEWIEFACPECSSPLGAYPSGVGSNGKPIDGGVRLFKCYISTSSTTGESSDVFRKYTLE 406

Query: 422 KMFANQLMGCATDESSFRFVVRDLATKSPVLQIILLNPDTWSCSGNCSVVEDEDPVPKLQ 481
           +MF NQL+ C+ +E SF  +V+DL TKSP+  I++LNP+T+S +G CS    ++P   L+
Sbjct: 407 RMFTNQLVECSKEELSFHVLVKDLTTKSPLFNIVILNPNTFSSTGLCS--SQDEPGSALE 464

Query: 482 LRPIIKVLFSDFRAATESQLRMIEEWATKNSAEIFFMLSRQIQDLMGSLMTAKDIYPPSY 541
           L  I+KVLFSD  ++             K   E  ++L  Q ++L+  +  A    P S 
Sbjct: 465 LSAIVKVLFSDCNSS-----------VVKKIDEEVYILKGQGEELIELITNASKFLPSSC 513

Query: 542 ASYQGLILSSVH 553
           +  QG ++SS+H
Sbjct: 514 SYLQGALVSSMH 525