Miyakogusa Predicted Gene

Lj4g3v0975570.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0975570.2 Non Chatacterized Hit- tr|I1JCN0|I1JCN0_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,78.06,0,era:
GTP-binding protein Era,GTP-binding protein Era; small_GTP: small
GTP-binding protein domain,Sm,CUFF.48248.2
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66470.1 | Symbols:  | RNA binding;GTP binding | chr5:2654198...   577   e-165
AT1G30960.1 | Symbols:  | GTP-binding family protein | chr1:1103...   103   2e-22
AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein | ch...    72   1e-12
AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein | ch...    71   1e-12
AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative | c...    61   1e-09

>AT5G66470.1 | Symbols:  | RNA binding;GTP binding |
           chr5:26541986-26544302 REVERSE LENGTH=427
          Length = 427

 Score =  577 bits (1487), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 264/335 (78%), Positives = 309/335 (92%)

Query: 119 DDTSFLSLTVKPDRNMALLDDYETEELDFDDGPNHRSGYVALLGKPNVGKSTLANQMVGQ 178
           D+ S LSL++KPDRNMALLDDYE EEL      +HRSGYVA++G PNVGKSTL+NQM+GQ
Sbjct: 93  DEASLLSLSMKPDRNMALLDDYEMEELGHTPNTHHRSGYVAVVGMPNVGKSTLSNQMIGQ 152

Query: 179 KLSIVTDKPQTTRHRILCICSGTDYQMVLYDTPGVLQKEMHKLDSMMMKNVRSAAVNADC 238
           K+SIVTDKPQTTRHRIL ICS  +YQM+LYDTPGV++K+MH+LD+MMMKNVR AA+NADC
Sbjct: 153 KISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADC 212

Query: 239 VLVLVDACKAPEKIDELLEEGIGDLKDKPPVLLILNKKDLIKPGEVAKKLEWYEKFTNVD 298
           V++LVDACK P  I+E+L+EG+GDL+ KPP+LL++NKKDLIKPGE+AKKLEWYEKFT+VD
Sbjct: 213 VVILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVD 272

Query: 299 EVIPVSAKYGHGVADVKDWILSKLPNGPSYYPKDIVSEHPERFFVAEIVREKIFMQYRNE 358
           EVIPVSAKYGHG+ DVK+WILSKLP GP YYPKDIVSEHPERFFV+EIVREKIFMQYRNE
Sbjct: 273 EVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNE 332

Query: 359 IPYACQVNVVSYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFL 418
           +PYACQVNV+SYK RP AKDFIQVE++V+KNSQK+I+IG+EGKALK LATA+RLDIEDFL
Sbjct: 333 VPYACQVNVLSYKTRPAAKDFIQVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFL 392

Query: 419 QKKVYLEIEVKVRENWRQDEGLLKDYGYGGQIRVL 453
           QKKV+LE+EVKV+ENWRQDEGLLK YGYGGQIR +
Sbjct: 393 QKKVFLEVEVKVKENWRQDEGLLKYYGYGGQIRAM 427


>AT1G30960.1 | Symbols:  | GTP-binding family protein |
           chr1:11037755-11039977 REVERSE LENGTH=437
          Length = 437

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 146/292 (50%), Gaps = 16/292 (5%)

Query: 152 NHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDTP 211
           + +S  V ++G PN GKS+L N MVG K++  + K  TT H +L + +  D Q+  +DTP
Sbjct: 150 DQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFDTP 209

Query: 212 GVLQKEMHKLDSMMMKNVRSAAVNA-------DCVLVLVDACK---APEKIDELLEEGIG 261
           G+    M K      K++++   NA       D ++V+ D  +   +P+     L + +G
Sbjct: 210 GL----MLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRVVRLIKYMG 265

Query: 262 DLKD-KPPVLLILNKKDLI-KPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVADVKDWIL 319
           + ++ K   +L +NK DL+ K  ++ K  E ++     +    +S   G GV D+  +++
Sbjct: 266 EEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLSQYLM 325

Query: 320 SKLPNGPSYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVSYKARPNAKDF 379
            +    P       +SE   +    E+VRE++      EIPY  +  +V +K   +    
Sbjct: 326 DQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGLEHRLVDWKELRDGSLR 385

Query: 380 IQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEVKVR 431
           I+  ++  K SQ+ I++G+ G  +  +   +  ++   + +KV+L ++VK++
Sbjct: 386 IEQHLITPKLSQRKILVGKGGCKIGRIGIEANEELRRIMNRKVHLILQVKLK 437


>AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein |
           chr3:3847851-3851980 FORWARD LENGTH=663
          Length = 663

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 33/201 (16%)

Query: 151 PNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDT 210
           P H    VA++G+PNVGKS L N++VG+  +IV D+P  TR R+       D + V+ DT
Sbjct: 154 PEHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDT 213

Query: 211 PGVL-----------------------------QKEMHKLDSMMMKNVRSAAVNADCVLV 241
            GV+                             +  + ++ SM+ K   +A   +  ++ 
Sbjct: 214 GGVMTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIF 273

Query: 242 LVDACKAPEKIDELLEEGIGDLKDKPPVLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVI 301
           +VD    P   D  + + +        ++L +NK +  + G +     W   FT     I
Sbjct: 274 VVDGQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTP----I 329

Query: 302 PVSAKYGHGVADVKDWILSKL 322
           P+SA  G G  ++ D + S L
Sbjct: 330 PISALSGTGTGELLDLVCSGL 350


>AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein |
           chr3:3847851-3851677 FORWARD LENGTH=587
          Length = 587

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 33/201 (16%)

Query: 151 PNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDT 210
           P H    VA++G+PNVGKS L N++VG+  +IV D+P  TR R+       D + V+ DT
Sbjct: 154 PEHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDT 213

Query: 211 PGVL-----------------------------QKEMHKLDSMMMKNVRSAAVNADCVLV 241
            GV+                             +  + ++ SM+ K   +A   +  ++ 
Sbjct: 214 GGVMTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIF 273

Query: 242 LVDACKAPEKIDELLEEGIGDLKDKPPVLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVI 301
           +VD    P   D  + + +        ++L +NK +  + G +     W   FT     I
Sbjct: 274 VVDGQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTP----I 329

Query: 302 PVSAKYGHGVADVKDWILSKL 322
           P+SA  G G  ++ D + S L
Sbjct: 330 PISALSGTGTGELLDLVCSGL 350


>AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative |
           chr1:29333535-29336297 FORWARD LENGTH=560
          Length = 560

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 158 VALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDTPGVLQKE 217
           +A++G+PNVGKS+L N     + +IVT+   TTR  +    +     + L DT G+  +E
Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGI--RE 377

Query: 218 MHKL-DSMMMKNVRSAAVNADCVLVLVDACKA-PEKIDELLEEGIGDLKDKPPVLLILNK 275
            + + + + ++   +AA  AD +++ V A +   E+  ELL +    ++   P++L++NK
Sbjct: 378 TNDIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRK----IQSDKPMILVMNK 433

Query: 276 KDLIKPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVADVKDWILS-----KLPNG 325
            D   PG   +  +  +K     + +  SA  G G+ +++D IL      ++P G
Sbjct: 434 IDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEILGLDRVPTG 488