Miyakogusa Predicted Gene

Lj4g3v0975500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0975500.1 Non Chatacterized Hit- tr|F6GWV0|F6GWV0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.86,4e-19,seg,NULL,CUFF.48244.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18210.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   1e-14
AT4G36500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    74   1e-14
AT3G50900.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    69   6e-13
AT5G66490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    62   7e-11

>AT2G18210.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G36500.1); Has 50 Blast hits to 50 proteins in
           7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:7925392-7925766 REVERSE
           LENGTH=124
          Length = 124

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 54  LQRNPTKKANNTSKSTHPLFSFLD-FRR--KKKTTARPEFTRYLEYLKEGGMWDLNSSKP 110
           L R    K   TSK +HP+FS  D +RR  KKK TA+PEF+RY EYLKE GMWDL S+ P
Sbjct: 60  LPRQKPTKTVVTSKLSHPIFSLFDGYRRHNKKKATAKPEFSRYHEYLKESGMWDLRSNSP 119

Query: 111 VIYYK 115
           VIY+K
Sbjct: 120 VIYFK 124


>AT4G36500.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT2G18210.1); Has 50 Blast
           hits to 50 proteins in 7 species: Archae - 0; Bacteria -
           0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr4:17226139-17226507 REVERSE LENGTH=122
          Length = 122

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 66/123 (53%), Gaps = 11/123 (8%)

Query: 1   MLRSFTTRR------YERLGKETASSALLQEGFKXXXXXXXXXXXXXXKMAHSTLGNI-- 52
           MLRS +TR       YER+  ++  S L   G K              K+    +  I  
Sbjct: 3   MLRSLSTRTRSRRGGYERVSDDSTFSLL---GAKLRRSTSVPYYAPSIKLGAGGVPTILE 59

Query: 53  NLQRNPTKKANNTSKSTHPLFSFLDFRRKKKTTARPEFTRYLEYLKEGGMWDLNSSKPVI 112
            L R  +KK   T K +HP+FS    ++KK TT +PEF+RYLEYLKEGGMWD  ++ PVI
Sbjct: 60  ELPRQKSKKVKPTGKFSHPIFSLFYGKKKKSTTTKPEFSRYLEYLKEGGMWDARANAPVI 119

Query: 113 YYK 115
           YYK
Sbjct: 120 YYK 122


>AT3G50900.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in
           7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:18918122-18918466 FORWARD
           LENGTH=114
          Length = 114

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 29/129 (22%)

Query: 1   MLRSFTTRR----YERLGKETASSALLQEGFKXXXXXXXXXXXXXXKMAHSTLGNINLQR 56
           M R+ +TR+    YE+LG E A                           HS      +++
Sbjct: 1   MFRAMSTRKIHGGYEKLGDEEA-------------RLKRVSSVPASVYGHSRNPVQEVKK 47

Query: 57  NPTKKANNTSKSTHPLFSFLD--FRRKKK--------TTARPEFTRYLEYLKEGGMWDLN 106
            PT K   T  S HPLFSF D  F+RKKK         TA+PEF RY+EY++EGG+WD +
Sbjct: 48  TPTAKP--TGGSVHPLFSFFDVHFQRKKKNTAKKKSLATAKPEFARYMEYVREGGVWDPS 105

Query: 107 SSKPVIYYK 115
           S+ PVI+Y+
Sbjct: 106 SNAPVIHYR 114


>AT5G66490.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT3G50900.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:26547423-26547752 REVERSE LENGTH=109
          Length = 109

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 26/125 (20%)

Query: 1   MLRSFTTRR----YERLGKETASSALLQEGFKXXXXXXXXXXXXXXKMAHSTLGNINLQR 56
           M+R+ +TR+    Y++LG E  + A L E                    H     +N   
Sbjct: 1   MIRALSTRKVRGSYKKLGDEEEAGAGLLE----------VKPESVPTNPHGQSPKVN--- 47

Query: 57  NPTKKANNTSKSTHPLFSFLDF------RRKKKTTARPEFTRYLEYLKEGGMWDLNSSKP 110
              K    T  S HPLFSF +       ++K  TTA+PEF RYLEY+KEGG+WD  S+ P
Sbjct: 48  ---KPVEKTRGSAHPLFSFFEMSLKRKKKKKSTTTAKPEFARYLEYVKEGGVWDNTSNGP 104

Query: 111 VIYYK 115
            IYY+
Sbjct: 105 AIYYR 109