Miyakogusa Predicted Gene

Lj4g3v0974400.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0974400.1 tr|A9RES0|A9RES0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65167
,34.18,1e-18,BAH,Bromo adjacent homology (BAH) domain; seg,NULL; Bromo
adjacent homology domain,Bromo adjacent ho,CUFF.48236.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11470.1 | Symbols:  | bromo-adjacent homology (BAH) domain-c...   188   2e-48
AT3G15605.4 | Symbols:  | nucleic acid binding | chr3:5288291-52...   100   4e-22
AT3G15605.3 | Symbols:  | nucleic acid binding | chr3:5288774-52...    56   1e-08
AT3G15605.2 | Symbols:  | nucleic acid binding | chr3:5288774-52...    56   1e-08
AT3G15605.1 | Symbols:  | nucleic acid binding | chr3:5288774-52...    56   1e-08

>AT5G11470.1 | Symbols:  | bromo-adjacent homology (BAH)
           domain-containing protein | chr5:3662757-3667041 REVERSE
           LENGTH=757
          Length = 757

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 125/180 (69%), Gaps = 6/180 (3%)

Query: 1   MAEESIEFKWXXXXXXXXXXXDVQFYESFTYDGVDYALYDTVYLDSGGE---FEPFVGKL 57
           +A E +EFKW           DVQFYESFTYDG +Y LYD V + +  E    EPF+G +
Sbjct: 5   VASEGLEFKWGKKKGVGGKKKDVQFYESFTYDGDEYRLYDCVLVGNASEPDSTEPFIGMI 64

Query: 58  IKIFENRDK--SKKVKVQWYFRPGEIRKFVEGIET-RHNELFFACGEGLGLANVNPLEAI 114
           IKI+E+ +K   KKVK+ W+F+P EI  ++EG+     NE+F A GEGLGLAN N LEAI
Sbjct: 65  IKIWEHANKHIPKKVKLLWFFKPSEIAPYLEGVPNVLANEVFLASGEGLGLANTNQLEAI 124

Query: 115 AGKCNVVCISKDIRNSQPSDEALQKADFVFHRFFDVGQRKILDTIDDKSAGIEVKDIFNK 174
            GKC+V+CISKD RN QPSDE    ADFVF R FDVG  K++DTIDDK AG++VK IFN+
Sbjct: 125 GGKCSVLCISKDKRNPQPSDEKFNSADFVFCRAFDVGSCKVVDTIDDKIAGVDVKFIFNR 184


>AT3G15605.4 | Symbols:  | nucleic acid binding |
           chr3:5288291-5290941 FORWARD LENGTH=481
          Length = 481

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 83/173 (47%), Gaps = 39/173 (22%)

Query: 2   AEESIEFKWXXXXXXXXXXXDVQFYESFTYDGVDYALYDTVYLDS-GGEFEPFVGKLIKI 60
            E++ +FKW            V+FYESFT +G++Y L+D  Y     GE+EP        
Sbjct: 9   GEDNPDFKWGAKRGVGRKDNKVRFYESFTLEGIEYRLFDCAYFYRFLGEYEP-------- 60

Query: 61  FENRDKSKKVKVQWYFRPGEIRKFVEGIETRHNELFFACGEGLGLANVNPLEAIAGKCNV 120
                       QW                  +ELF ACG+  G++N+N +E I GKCNV
Sbjct: 61  ------------QW------------------DELFLACGDEKGVSNINDVETIMGKCNV 90

Query: 121 VCISKDIRNSQPSDEALQKADFVFHRFFDVGQRKILDTIDDKSAGIEVKDIFN 173
           VC S D RN +P  + L++A ++F R FD   R I +   D  AGI V  +FN
Sbjct: 91  VCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 143


>AT3G15605.3 | Symbols:  | nucleic acid binding |
           chr3:5288774-5290941 FORWARD LENGTH=397
          Length = 397

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 116 GKCNVVCISKDIRNSQPSDEALQKADFVFHRFFDVGQRKILDTIDDKSAGIEVKDIFN 173
           GKCNVVC S D RN +P  + L++A ++F R FD   R I +   D  AGI V  +FN
Sbjct: 2   GKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 59


>AT3G15605.2 | Symbols:  | nucleic acid binding |
           chr3:5288774-5290941 FORWARD LENGTH=397
          Length = 397

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 116 GKCNVVCISKDIRNSQPSDEALQKADFVFHRFFDVGQRKILDTIDDKSAGIEVKDIFN 173
           GKCNVVC S D RN +P  + L++A ++F R FD   R I +   D  AGI V  +FN
Sbjct: 2   GKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 59


>AT3G15605.1 | Symbols:  | nucleic acid binding |
           chr3:5288774-5290941 FORWARD LENGTH=399
          Length = 399

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 116 GKCNVVCISKDIRNSQPSDEALQKADFVFHRFFDVGQRKILDTIDDKSAGIEVKDIFN 173
           GKCNVVC S D RN +P  + L++A ++F R FD   R I +   D  AGI V  +FN
Sbjct: 2   GKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 59