Miyakogusa Predicted Gene

Lj4g3v0949910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0949910.1 tr|F2XX47|F2XX47_LITCN Succinate dehydrogenase
OS=Litchi chinensis PE=2
SV=1,87.18,0.00000000000009,Succ_DH_flav_C,Fumarate
reductase/succinate dehydrogenase flavoprotein-like,
C-terminal,CUFF.48212.1
         (39 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66760.1 | Symbols: SDH1-1 | succinate dehydrogenase 1-1 | ch...    75   7e-15
AT2G18450.1 | Symbols: SDH1-2 | succinate dehydrogenase 1-2 | ch...    65   1e-11

>AT5G66760.1 | Symbols: SDH1-1 | succinate dehydrogenase 1-1 |
           chr5:26653776-26657224 FORWARD LENGTH=634
          Length = 634

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/39 (79%), Positives = 35/39 (89%)

Query: 1   MKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 39
           MKHT+GYWE+EKVRLDYRPVHM+TLDDE +  PP ARVY
Sbjct: 596 MKHTLGYWEDEKVRLDYRPVHMDTLDDEIDTFPPKARVY 634


>AT2G18450.1 | Symbols: SDH1-2 | succinate dehydrogenase 1-2 |
           chr2:7997510-8000801 REVERSE LENGTH=632
          Length = 632

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 30/39 (76%)

Query: 1   MKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 39
           MKHT+GYWE   V+L+YRPVHM TLDDE +  PP  RVY
Sbjct: 594 MKHTLGYWEEGNVKLEYRPVHMKTLDDEVDTFPPKPRVY 632