Miyakogusa Predicted Gene

Lj4g3v0913480.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0913480.1 tr|G7LFK4|G7LFK4_MEDTR V-type proton ATPase
subunit H OS=Medicago truncatula GN=MTR_8g078370 PE=4
SV,93.21,0,V-TYPE PROTON ATPASE SUBUNIT H,NULL; V-TYPE PROTON ATPASE
SUBUNIT H,ATPase, V1 complex, subunit H;
n,NODE_30654_length_1094_cov_283.676422.path2.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family...   287   2e-78

>AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family
           protein | chr3:14228846-14232228 REVERSE LENGTH=441
          Length = 441

 Score =  287 bits (735), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 152/163 (93%)

Query: 1   MVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSP 60
           MVDL LP ++ SLK QAWSDEDLL+ALN LEEGLKD IKKLSSFDKYKQEVLLG+LDW+P
Sbjct: 279 MVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDWNP 338

Query: 61  MHKDLIFWRENVTNFEENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIV 120
           MHK+  FWRENVT FEENDFQI+RVL+TILD+S+DPR+LAVACFD+SQF+QYH +GR+IV
Sbjct: 339 MHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIV 398

Query: 121 ADLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQA 163
           ADLKAKERVMKL+NHE+AEVTKNA+LCIQRL LGAKYASFLQA
Sbjct: 399 ADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441