Miyakogusa Predicted Gene

Lj4g3v0911410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0911410.1 tr|G7LFK4|G7LFK4_MEDTR V-type proton ATPase
subunit H OS=Medicago truncatula GN=MTR_8g078370 PE=4 SV,93.83,0,ARM
repeat,Armadillo-type fold; no description,Armadillo-like helical; no
description,ATPase, V1 com,CUFF.48592.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family...   287   2e-78

>AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family
           protein | chr3:14228846-14232228 REVERSE LENGTH=441
          Length = 441

 Score =  287 bits (735), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 152/163 (93%)

Query: 1   MVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSP 60
           MVDL LP ++ SLK QAWSDEDLL+ALN LEEGLKD IKKLSSFDKYKQEVLLG+LDW+P
Sbjct: 279 MVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDWNP 338

Query: 61  MHKDLIFWRENVTNFEENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIV 120
           MHK+  FWRENVT FEENDFQI+RVL+TILD+S+DPR+LAVACFD+SQF+QYH +GR+IV
Sbjct: 339 MHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIV 398

Query: 121 ADLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQA 163
           ADLKAKERVMKL+NHE+AEVTKNA+LCIQRL LGAKYASFLQA
Sbjct: 399 ADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441