Miyakogusa Predicted Gene

Lj4g3v0891300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0891300.1 Non Chatacterized Hit- tr|A5ATA8|A5ATA8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.68,0.00000000005,UBN2_3,NULL,CUFF.48161.1
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...    52   1e-07

>AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); Has
           707 Blast hits to 705 proteins in 25 species: Archae -
           0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7447690-7448403 REVERSE LENGTH=237
          Length = 237

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 10  QIYELTLKVREIRQGGNNVTKYFHSLKRVWQDLDLFNTYK-----WNSAEDAKHHRQTVE 64
           +IY+L  ++  +RQGG++V +YF  L +VW +L  +           + E  K   +  E
Sbjct: 126 KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEARE 185

Query: 65  EGRIFQFLAG--LNEELDEVRGRIIGRATLPSLGEVFAEVRREET 107
           + + ++FL G  LN+  + V  +I+ +   PSL E FA V+  E+
Sbjct: 186 KEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAES 230