Miyakogusa Predicted Gene

Lj4g3v0877650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0877650.1 tr|A9S0S4|A9S0S4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_122476,47.24,2e-18,WCOR413,Cold acclimation
WCOR413,gene.g53495.t1.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50830.1 | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulated...   187   1e-48
AT4G37220.1 | Symbols:  | Cold acclimation protein WCOR413 famil...   165   8e-42
AT2G15970.1 | Symbols: COR413-PM1, WCOR413, WCOR413-LIKE, ATCOR4...   151   2e-37
AT2G23680.2 | Symbols:  | Cold acclimation protein WCOR413 famil...   106   5e-24
AT2G23680.1 | Symbols:  | Cold acclimation protein WCOR413 famil...   106   5e-24
AT2G15970.2 | Symbols: COR413-PM1 | cold regulated 413 plasma me...    84   3e-17
AT1G29390.1 | Symbols: COR314-TM2, COR413IM2 | cold regulated 31...    58   2e-09
AT1G29390.2 | Symbols: COR314-TM2, COR413IM2 | cold regulated 31...    58   2e-09
AT1G29395.1 | Symbols: COR414-TM1, COR413IM1, COR413-TM1 | COLD ...    55   1e-08

>AT3G50830.1 | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulated
           413-plasma membrane 2 | chr3:18894109-18895355 REVERSE
           LENGTH=203
          Length = 203

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 102/123 (82%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLTSLL+PYIF S P  +F+FL G+VGKWIAF+AVVLRLFF ++FPD LE+PGS+ILLL 
Sbjct: 74  MLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLV 133

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           V+P   A   R  W+G  I LFIGCYLLQEHIRA+GGFRNSFTQ  G+SNTLGI+LL+VY
Sbjct: 134 VSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNTLGIILLLVY 193

Query: 121 PVW 123
           PVW
Sbjct: 194 PVW 196


>AT4G37220.1 | Symbols:  | Cold acclimation protein WCOR413 family |
           chr4:17515106-17515969 FORWARD LENGTH=202
          Length = 202

 Score =  165 bits (418), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 96/123 (78%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLT+LLVPYIFF+ P  +F F  G+ GKWIA IA+++RLFF + FP+ LEIP ++IL++ 
Sbjct: 73  MLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEWLEIPVALILIVV 132

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           V+P L A   R +WVG  I L I CYL  EHI+A+GGF+NSFTQK+GISNT+GI+ L+VY
Sbjct: 133 VSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNGISNTIGIVALLVY 192

Query: 121 PVW 123
           PVW
Sbjct: 193 PVW 195


>AT2G15970.1 | Symbols: COR413-PM1, WCOR413, WCOR413-LIKE,
           ATCOR413-PM1, FL3-5A3, ATCYP19 | cold regulated 413
           plasma membrane 1 | chr2:6950163-6951012 FORWARD
           LENGTH=197
          Length = 197

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 103/123 (83%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLTSLL+PYIFFS P  +F   RGE+GKWIAF+AVV++LFF ++  + LE+P +++LL  
Sbjct: 71  MLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAV 130

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           VAP+L A  FR++W+G+AI L IGCYLLQEHIRA+GGFRN+FT+ +GISNT+GI+ L+V+
Sbjct: 131 VAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGIICLVVF 190

Query: 121 PVW 123
           PVW
Sbjct: 191 PVW 193


>AT2G23680.2 | Symbols:  | Cold acclimation protein WCOR413 family |
           chr2:10066460-10067164 FORWARD LENGTH=147
          Length = 147

 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 2/124 (1%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           ++ SLL PY+F S P  +F  LR  VGKWIA + V+LRLF   +F + LEIPG+ ILL+ 
Sbjct: 14  IMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIV 73

Query: 61  VAPDLFAQRFRNN--WVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLI 118
           V P      FR++  + G  + L    YL+ +H +A GG +NSFTQK  ++ ++ + +L 
Sbjct: 74  VTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILF 133

Query: 119 VYPV 122
           VYP+
Sbjct: 134 VYPI 137


>AT2G23680.1 | Symbols:  | Cold acclimation protein WCOR413 family |
           chr2:10066242-10067164 FORWARD LENGTH=189
          Length = 189

 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 2/124 (1%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           ++ SLL PY+F S P  +F  LR  VGKWIA + V+LRLF   +F + LEIPG+ ILL+ 
Sbjct: 56  IMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIV 115

Query: 61  VAPDLFAQRFRNN--WVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLI 118
           V P      FR++  + G  + L    YL+ +H +A GG +NSFTQK  ++ ++ + +L 
Sbjct: 116 VTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILF 175

Query: 119 VYPV 122
           VYP+
Sbjct: 176 VYPI 179


>AT2G15970.2 | Symbols: COR413-PM1 | cold regulated 413 plasma
           membrane 1 | chr2:6950163-6951060 FORWARD LENGTH=165
          Length = 165

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 66/84 (78%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLTSLL+PYIFFS P  +F   RGE+GKWIAF+AVV++LFF ++  + LE+P +++LL  
Sbjct: 71  MLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAV 130

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIG 84
           VAP+L A  FR++W+G+AI L IG
Sbjct: 131 VAPNLIAGTFRDSWIGLAICLGIG 154


>AT1G29390.1 | Symbols: COR314-TM2, COR413IM2 | cold regulated 314
           thylakoid membrane 2 | chr1:10286409-10287878 REVERSE
           LENGTH=226
          Length = 226

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 4   SLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAP 63
           S +VP      P  +  +++GE G W AF+A++ RLFF  +FP  LE+P   +LL+ VAP
Sbjct: 108 SFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFF--SFPVELELPFIALLLVIVAP 165

Query: 64  DLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQ 104
                  R    G  + L I C+L  +H    G  + +F Q
Sbjct: 166 -YQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQ 205


>AT1G29390.2 | Symbols: COR314-TM2, COR413IM2 | cold regulated 314
           thylakoid membrane 2 | chr1:10286409-10287668 REVERSE
           LENGTH=183
          Length = 183

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 4   SLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAP 63
           S +VP      P  +  +++GE G W AF+A++ RLFF  +FP  LE+P   +LL+ VAP
Sbjct: 65  SFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFF--SFPVELELPFIALLLVIVAP 122

Query: 64  DLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQ 104
                  R    G  + L I C+L  +H    G  + +F Q
Sbjct: 123 YQ-VMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQ 162


>AT1G29395.1 | Symbols: COR414-TM1, COR413IM1, COR413-TM1 | COLD
           REGULATED 314 INNER MEMBRANE 1 | chr1:10288345-10289539
           REVERSE LENGTH=225
          Length = 225

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 4   SLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAP 63
           S++VP      P S+  +++GE G W AF+A++ RLFF   FP  LE+P   +LL+ VAP
Sbjct: 107 SVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFF--TFPGELELPFIALLLVIVAP 164

Query: 64  DLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIV 119
                  R    G  I + I  +L  +H    G    ++ +K  +  T+ I+ + V
Sbjct: 165 -YQVMNIRGKQEGAIIAIAISGFLAFQHFSRAGSLEKAY-EKGSVLATVAIIGVTV 218