Miyakogusa Predicted Gene

Lj4g3v0867490.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0867490.3 Non Chatacterized Hit- tr|E1ZDD1|E1ZDD1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.9,0.000000003,seg,NULL; VACUOLAR PROTEIN
SORTING-ASSOCIATED PROTEIN (VPS13),Vacuolar protein sorting-associated
pr,CUFF.48146.3
         (951 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50380.1 | Symbols:  | Protein of unknown function (DUF1162) ...   988   0.0  

>AT3G50380.1 | Symbols:  | Protein of unknown function (DUF1162) |
            chr3:18686527-18700533 REVERSE LENGTH=3072
          Length = 3072

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/935 (53%), Positives = 644/935 (68%), Gaps = 58/935 (6%)

Query: 1    MTNLLHSEIDVLLSETGQPKLVEYDKIGKQATISCGSTVDFYANPELIYFTVNLXXXXXX 60
            ++N L SE  +LL+ET Q   +E   IGK ATI  G T+DFY NP++IYF V L      
Sbjct: 2053 VSNFLSSEAAILLTETDQNTSMERHSIGKHATIQSGKTIDFYVNPDMIYFRVTLTTSQAS 2112

Query: 61   XKPVNSGDCVKKLLKQNNDVQHVDIKLDLDGGNFSATLRLYRGNRGILEVVVFTSYSMKN 120
             KPVNSG  VKKL KQ ND Q +D+ LD  GG + A+LRL  G RGILE  VFTSY +KN
Sbjct: 2113 CKPVNSGQWVKKLQKQKNDAQCLDVDLDFSGGKYCASLRLSLGKRGILEAAVFTSYILKN 2172

Query: 121  DTASPIYVLATKRWPLSRVELDNLNSNIPSELGLFLPPKSTRSWFLKSEKVQLKLLEDH- 179
            D+   ++     + PLSR +++ L+  +P E GL+LPPK+  SWFL+S KV + L + H 
Sbjct: 2173 DSDCTLFFFPPDQKPLSREDMEKLDHIVPPEFGLYLPPKTEGSWFLRSRKVGVILADGHG 2232

Query: 180  TSEALLDFGSLSGLTEISFKKEEGSGIKSVTKIGVSIGPSSGEIVVPSQMVTLVPRYVIC 239
             +EA+LD  +LSGLTEIS   ++ SG                             R+++ 
Sbjct: 2233 ATEAVLDLDALSGLTEISLGTKDESGF----------------------------RHLVI 2264

Query: 240  NESEERIIVRQCYFQDEEAGFVSIDSKQRVPLQLKEGLSKKREFSVFEHFIRKHRFSSDN 299
            NESEE I +RQ YFQD+  G ++I SKQR  L+L+E   +K+E  +FE+FI+KH   S N
Sbjct: 2265 NESEETINIRQHYFQDDSVGIITIKSKQRAALRLQEETIQKKELHLFENFIKKHGSDSAN 2324

Query: 300  SLLYIQIQTNEPGLGWSGPVCIASLGHFFLKFRKETDEVKTLDNKMTQFAAVHVVEEGST 359
            SL++IQ                         FRK++ E         +FA+V+V EEGST
Sbjct: 2325 SLIFIQ-------------------------FRKQSGEA---GRGAIEFASVNVTEEGST 2356

Query: 360  LVLSFYKPPNLSLPYRIENCLHSLSITCYQKDSLVPEVLGPACSADYVWDDLTLPRKLVV 419
            L + F KPPN   PYRIEN LHS S+T YQKDS   EVLGP   ADY WDD+TLP KLVV
Sbjct: 2357 LAVHFQKPPNTPPPYRIENFLHSASLTYYQKDSSEIEVLGPGSGADYAWDDMTLPHKLVV 2416

Query: 420  RINDSLQLREIKLDKVQAWRPFYKLGQQGVLAPRLLFDKGSRDQRVSFREPSGMEMEKVG 479
             ++  + LRE+ LDKV+ W+P +K  Q   +A  L+  K ++D + + +E S + M KVG
Sbjct: 2417 IVDGMIPLREVSLDKVRPWKPLFKATQHRSIASHLMMKKKAKDHKTADKELSRIPMVKVG 2476

Query: 480  FEIYAEGPTRVLRICEISDSFKRQTVHALCAKIQLRVSQFAVHLLEHVTQEEDDNERKDF 539
            +E+YA+G TRV+RICE+S+S K  +     +KIQ RV+   VHLLE V Q  ++     +
Sbjct: 2477 YEVYADGLTRVIRICEVSESLKGDSAFQSRSKIQFRVTHLGVHLLEKVKQNAEEKTVVSY 2536

Query: 540  SPIVVAKLGNLHMITISNNHQKYNQFSIQYLNFDLKWKGAPFSSMLRGHQLDYSESNDSA 599
            SPI+VA+L N+ + ++  + QK+NQ  I+ LN D KW GAPF++MLR HQ   S++N   
Sbjct: 2537 SPILVARLENVGLHSMFTDQQKFNQLCIEALNVDHKWAGAPFAAMLRQHQSSSSDANGCL 2596

Query: 600  XXXXXXXXXXXXXXXQLKYSSIFLQPIDLNIDEETLMKIVSFWRSSLSA-SESQRYYFDH 658
                           Q+K+SSI LQP++LN+DEETLM++V+FWRSSLS  ++S +YYFDH
Sbjct: 2597 FKCVFILVSSGSSVTQVKHSSIVLQPVNLNLDEETLMRVVAFWRSSLSTNTQSSQYYFDH 2656

Query: 659  FEVHPIKIIANFIPGEPRSSYSSAQEALRSLIHSVVKVPSIKSRVVELNGVLITHALITM 718
            FE+HPIKI ANF+PG   SSY+SAQE LRSL+HSVVKVP IK+ VVELNGVL+THALIT+
Sbjct: 2657 FEIHPIKITANFVPGSSYSSYNSAQETLRSLLHSVVKVPHIKNMVVELNGVLVTHALITV 2716

Query: 719  RELFIKCAQHYSWYTMRAIYIAKGSTLLPPEFVSIFDDLASSSLDVFFDPSRGLANFPGF 778
            REL ++C +HYSWY MRAIYIAKGS LLPP F S+FDD +SSSLD FFDPSRGL N PG 
Sbjct: 2717 RELLLRCVKHYSWYAMRAIYIAKGSPLLPPAFASMFDDFSSSSLDAFFDPSRGLVNVPGL 2776

Query: 779  TLGTFKLISKCIKGKGFSGTKRYFGDLGKTLRSAGSNIAFAAVAEISDSVLKGAEANGFD 838
            T+GTFKL+SK I  KG SGT+RYFGDLGKTLR+AGSN+ F A+ EISDSVL+GAE  G D
Sbjct: 2777 TVGTFKLLSKLIDNKGLSGTRRYFGDLGKTLRTAGSNVVFVALTEISDSVLRGAEMKGVD 2836

Query: 839  GLMSGFHQGILKLAMEPSFLGTALMEGGPDRKILLDQSPGVDELYIEGYIQAMLDTVYRQ 898
            GL+SGFH GILKLAMEPS +GTALMEGGPDR I LD++PG+DELYIEGY+QAMLDT+YRQ
Sbjct: 2837 GLVSGFHHGILKLAMEPSVIGTALMEGGPDRTIKLDRNPGIDELYIEGYLQAMLDTMYRQ 2896

Query: 899  EYLRVRVIDNQVILKNLPPNHSLINEITNRVKEFL 933
            EYLRV+VID+QV LKNLPP++SLI+E+ +RVK+FL
Sbjct: 2897 EYLRVKVIDDQVFLKNLPPSNSLIDEMIDRVKDFL 2931