Miyakogusa Predicted Gene

Lj4g3v0867490.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0867490.2 Non Chatacterized Hit- tr|F6I7D8|F6I7D8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,61.06,0,seg,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),Vacuolar protein sorting-associated pr,CUFF.48146.2
         (1065 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50380.1 | Symbols:  | Protein of unknown function (DUF1162) ...  1095   0.0  

>AT3G50380.1 | Symbols:  | Protein of unknown function (DUF1162) |
            chr3:18686527-18700533 REVERSE LENGTH=3072
          Length = 3072

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1030 (53%), Positives = 717/1030 (69%), Gaps = 58/1030 (5%)

Query: 20   IKGGKAVRLSGIFDKLNYRVRKALFEKSVKCSFSTAHCTLKSEGVSVSKMHFLIQTIARE 79
            ++GGKAVRL+GIFDKL+Y V+KAL  +SVK S +T +C++ SE   V K+HFLI +I RE
Sbjct: 1958 LEGGKAVRLTGIFDKLSYGVKKALSIESVKVSLTTTYCSVTSESQCVGKVHFLIHSIRRE 2017

Query: 80   VPIASPEKSAAVLKNENSTVSLLEQKEIFLLPTVRMTNLLHSEIDVLLSETGQPKLVEYD 139
            V I  P+ S+ VL+ + + ++L EQKEIFLLPTV+++N L SE  +LL+ET Q   +E  
Sbjct: 2018 VSIIRPDASSDVLEKQKACIALREQKEIFLLPTVQVSNFLSSEAAILLTETDQNTSMERH 2077

Query: 140  KIGKQATISCGSTVDFYANPELIYFTVNLXXXXXXXKPVNSGDCVKKLLKQNNDVQHVDI 199
             IGK ATI  G T+DFY NP++IYF V L       KPVNSG  VKKL KQ ND Q +D+
Sbjct: 2078 SIGKHATIQSGKTIDFYVNPDMIYFRVTLTTSQASCKPVNSGQWVKKLQKQKNDAQCLDV 2137

Query: 200  KLDLDGGNFSATLRLYRGNRGILEVVVFTSYSMKNDTASPIYVLATKRWPLSRVELDNLN 259
             LD  GG + A+LRL  G RGILE  VFTSY +KND+   ++     + PLSR +++ L+
Sbjct: 2138 DLDFSGGKYCASLRLSLGKRGILEAAVFTSYILKNDSDCTLFFFPPDQKPLSREDMEKLD 2197

Query: 260  SNIPSELGLFLPPKSTRSWFLKSEKVQLKLLEDH-TSEALLDFGSLSGLTEISFKKEEGS 318
              +P E GL+LPPK+  SWFL+S KV + L + H  +EA+LD  +LSGLTEIS   ++ S
Sbjct: 2198 HIVPPEFGLYLPPKTEGSWFLRSRKVGVILADGHGATEAVLDLDALSGLTEISLGTKDES 2257

Query: 319  GIKSVTKIGVSIGPSSGEIVVPSQMVTLVPRYVICNESEERIIVRQCYFQDEEAGFVSID 378
            G                             R+++ NESEE I +RQ YFQD+  G ++I 
Sbjct: 2258 GF----------------------------RHLVINESEETINIRQHYFQDDSVGIITIK 2289

Query: 379  SKQRVPLQLKEGLSKKREFSVFEHFIRKHRFSSDNSLLYIQIQTNEPGLGWSGPVCIASL 438
            SKQR  L+L+E   +K+E  +FE+FI+KH   S NSL++IQ                   
Sbjct: 2290 SKQRAALRLQEETIQKKELHLFENFIKKHGSDSANSLIFIQ------------------- 2330

Query: 439  GHFFLKFRKETDEVKTLDNKMTQFAAVHVVEEGSTLVLSFYKPPNLSLPYRIENCLHSLS 498
                  FRK++ E         +FA+V+V EEGSTL + F KPPN   PYRIEN LHS S
Sbjct: 2331 ------FRKQSGEA---GRGAIEFASVNVTEEGSTLAVHFQKPPNTPPPYRIENFLHSAS 2381

Query: 499  ITCYQKDSLVPEVLGPACSADYVWDDLTLPRKLVVRINDSLQLREIKLDKVQAWRPFYKL 558
            +T YQKDS   EVLGP   ADY WDD+TLP KLVV ++  + LRE+ LDKV+ W+P +K 
Sbjct: 2382 LTYYQKDSSEIEVLGPGSGADYAWDDMTLPHKLVVIVDGMIPLREVSLDKVRPWKPLFKA 2441

Query: 559  GQQGVLAPRLLFDKGSRDQRVSFREPSGMEMEKVGFEIYAEGPTRVLRICEISDSFKRQT 618
             Q   +A  L+  K ++D + + +E S + M KVG+E+YA+G TRV+RICE+S+S K  +
Sbjct: 2442 TQHRSIASHLMMKKKAKDHKTADKELSRIPMVKVGYEVYADGLTRVIRICEVSESLKGDS 2501

Query: 619  VHALCAKIQLRVSQFAVHLLEHVTQEEDDNERKDFSPIVVAKLGNLHMITISNNHQKYNQ 678
                 +KIQ RV+   VHLLE V Q  ++     +SPI+VA+L N+ + ++  + QK+NQ
Sbjct: 2502 AFQSRSKIQFRVTHLGVHLLEKVKQNAEEKTVVSYSPILVARLENVGLHSMFTDQQKFNQ 2561

Query: 679  FSIQYLNFDLKWKGAPFSSMLRGHQLDYSESNDSAXXXXXXXXXXXXXXXQLKYSSIFLQ 738
              I+ LN D KW GAPF++MLR HQ   S++N                  Q+K+SSI LQ
Sbjct: 2562 LCIEALNVDHKWAGAPFAAMLRQHQSSSSDANGCLFKCVFILVSSGSSVTQVKHSSIVLQ 2621

Query: 739  PIDLNIDEETLMKIVSFWRSSLSA-SESQRYYFDHFEVHPIKIIANFIPGEPRSSYSSAQ 797
            P++LN+DEETLM++V+FWRSSLS  ++S +YYFDHFE+HPIKI ANF+PG   SSY+SAQ
Sbjct: 2622 PVNLNLDEETLMRVVAFWRSSLSTNTQSSQYYFDHFEIHPIKITANFVPGSSYSSYNSAQ 2681

Query: 798  EALRSLIHSVVKVPSIKSRVVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGS 857
            E LRSL+HSVVKVP IK+ VVELNGVL+THALIT+REL ++C +HYSWY MRAIYIAKGS
Sbjct: 2682 ETLRSLLHSVVKVPHIKNMVVELNGVLVTHALITVRELLLRCVKHYSWYAMRAIYIAKGS 2741

Query: 858  TLLPPEFVSIFDDLASSSLDVFFDPSRGLANFPGFTLGTFKLISKCIKGKGFSGTKRYFG 917
             LLPP F S+FDD +SSSLD FFDPSRGL N PG T+GTFKL+SK I  KG SGT+RYFG
Sbjct: 2742 PLLPPAFASMFDDFSSSSLDAFFDPSRGLVNVPGLTVGTFKLLSKLIDNKGLSGTRRYFG 2801

Query: 918  DLGKTLRSAGSNIAFAAVAEISDSVLKGAEANGFDGLMSGFHQGILKLAMEPSFLGTALM 977
            DLGKTLR+AGSN+ F A+ EISDSVL+GAE  G DGL+SGFH GILKLAMEPS +GTALM
Sbjct: 2802 DLGKTLRTAGSNVVFVALTEISDSVLRGAEMKGVDGLVSGFHHGILKLAMEPSVIGTALM 2861

Query: 978  EGGPDRKILLDQSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLIN 1037
            EGGPDR I LD++PG+DELYIEGY+QAMLDT+YRQEYLRV+VID+QV LKNLPP++SLI+
Sbjct: 2862 EGGPDRTIKLDRNPGIDELYIEGYLQAMLDTMYRQEYLRVKVIDDQVFLKNLPPSNSLID 2921

Query: 1038 EITNRVKEFL 1047
            E+ +RVK+FL
Sbjct: 2922 EMIDRVKDFL 2931