Miyakogusa Predicted Gene

Lj4g3v0816850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0816850.1 Non Chatacterized Hit- tr|D7L1U6|D7L1U6_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,70,2e-19,PROTEIN RER1,Retrieval of early ER protein Rer1;
Rer1,Retrieval of early ER protein
Rer1,NODE_58446_length_239_cov_286.460266.path2.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum ...   100   2e-22
AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:1826...    99   5e-22
AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...    96   5e-21
AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...    92   7e-20
AT2G18240.1 | Symbols:  | Rer1 family protein | chr2:7935466-793...    69   9e-13
AT2G18240.2 | Symbols:  | Rer1 family protein | chr2:7935466-793...    69   9e-13

>AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum
           retrieval protein 1B | chr2:9243550-9244579 FORWARD
           LENGTH=195
          Length = 195

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAES 59
           MTFFS FDVPVFWPILL YWV LF LTMRRQIAHMI++KY+PFS GK +Y G+++SA S
Sbjct: 130 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSANS 188


>AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein |
           chr4:18264280-18265531 FORWARD LENGTH=191
          Length = 191

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 49/58 (84%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAE 58
           MTFFS FDVPVFWPILL YW+ LF LTMRRQIAHMI+YKY+PFSFGK +Y G+ +S  
Sbjct: 131 MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGS 188


>AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=212
          Length = 212

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 49/60 (81%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFF  FDVPVFWPILLFYWV LF LTMR+QI HMI+Y+YVPFSFGK +Y  K A  ES+
Sbjct: 152 MTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTESS 211


>AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=211
          Length = 211

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFF  FDVPVFWPILLFYWV LF LTMR+QI HMI+Y+YVPFSFGK +Y  K A  ES+
Sbjct: 152 MTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGK-KYGKKPAPTESS 210


>AT2G18240.1 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=221
          Length = 221

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGK 47
           MTFFS  DVPVFWPILL YW+ L++LTM+R I HM +Y+Y PF   K
Sbjct: 134 MTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180


>AT2G18240.2 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=220
          Length = 220

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGK 47
           MTFFS  DVPVFWPILL YW+ L++LTM+R I HM +Y+Y PF   K
Sbjct: 134 MTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180