Miyakogusa Predicted Gene
- Lj4g3v0816700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0816700.1 Non Chatacterized Hit- tr|J3N9T9|J3N9T9_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB11G2,29.48,2e-18,Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat, cysteine-containing subtype;
no de,CUFF.48072.1
(530 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting prote... 520 e-147
AT1G47056.1 | Symbols: VFB1 | VIER F-box proteine 1 | chr1:17276... 487 e-137
AT3G50080.1 | Symbols: VFB2 | VIER F-box proteine 2 | chr3:18572... 483 e-136
AT4G07400.1 | Symbols: VFB3 | VIER F-box proteine 3 | chr4:41978... 462 e-130
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 100 2e-21
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 82 1e-15
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 76 6e-14
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:26... 71 2e-12
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 62 7e-10
AT3G07550.2 | Symbols: | RNI-like superfamily protein | chr3:24... 60 4e-09
AT3G07550.1 | Symbols: | RNI-like superfamily protein | chr3:24... 60 4e-09
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr... 57 3e-08
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 55 8e-08
AT1G80570.1 | Symbols: | RNI-like superfamily protein | chr1:30... 54 2e-07
AT1G80570.3 | Symbols: | RNI-like superfamily protein | chr1:30... 54 2e-07
AT1G80570.2 | Symbols: | RNI-like superfamily protein | chr1:30... 54 2e-07
AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein... 53 6e-07
AT5G07670.1 | Symbols: | RNI-like superfamily protein | chr5:24... 51 3e-06
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 50 4e-06
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 50 4e-06
AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 | chr3:986... 50 4e-06
>AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting protein
2 | chr5:26831677-26833260 REVERSE LENGTH=527
Length = 527
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 273/534 (51%), Positives = 352/534 (65%), Gaps = 13/534 (2%)
Query: 1 MGQSPSTPAPSPDHH------RRDIFTTIDADFPNDSLIRDYTAEIPDECLAAIFHLLTT 54
MGQ+PS+ A S I ++ + + RD+T ++PDECLA +F L
Sbjct: 1 MGQAPSSTAESNGRELDLRLWSPVIVAGGESMAVGNVVDRDFTGDLPDECLAHVFQFLGA 60
Query: 55 TDRKICSAVCRRWLRVDGENRRRLSLNAEASLLDAIPSLFSRFDSVTKLSLRCTRRATSI 114
DRK CS VC+RWL VDG++R RLSL+A+ + + S+F+RFDSVTKL+LRC R++ S+
Sbjct: 61 GDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSL 120
Query: 115 GDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSCMFGAKGVYAV 174
D+ L +IS+RC L R+KLRGCREIT++GM FA+NC K LKKLSVGSC FGAKGV A+
Sbjct: 121 SDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNC-KNLKKLSVGSCNFGAKGVNAM 179
Query: 175 IEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVXXXXXXXXXXXXVNGHSFAPLIIGSK 234
+EHC +LEELSVKRLRG+ + E + + + VNG F PL+ ++
Sbjct: 180 LEHCKLLEELSVKRLRGIH-EAAELIH-LPDDASSSSLRSICLKELVNGQVFEPLLATTR 237
Query: 235 KLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETLHLVKT 294
L+TLK+IRCLGDWD L + S L EIHLE++QVSD+GL+ +SKC N+ETLH+VKT
Sbjct: 238 TLKTLKIIRCLGDWDKVLQMIANGKSSLSEIHLERLQVSDIGLSAISKCSNVETLHIVKT 297
Query: 295 PECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMYPTSLS 354
PECS+ GL VAERCK+LRKLHIDGWR NRIGD+GL+SVAK+C NLQELVLI + T +S
Sbjct: 298 PECSNFGLIYVAERCKLLRKLHIDGWRTNRIGDEGLLSVAKHCLNLQELVLIGVNATHMS 357
Query: 355 LAEIASNCQGLERFALCGIGTVGDADIECFAAKCGALKKMCIKGCPVSNAGIAAFASGCP 414
LA IASNC+ LER ALCG GT+GD +I C A KCGAL+K CIKGCPVS+ GI A A GCP
Sbjct: 358 LAAIASNCEKLERLALCGSGTIGDTEIACIARKCGALRKFCIKGCPVSDRGIEALAVGCP 417
Query: 415 NXXXXXXXXXXXXTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSDGGARETTMAFPPMD 474
N TGEI +WLRE+R +L + D E E + G ET + P +
Sbjct: 418 NLVKLKVKKCKVVTGEIGDWLREQRRTLVVSMDGDETEAV---VVVDGEVETVVEEPRVA 474
Query: 475 TQVNLADDAPXXXXXXXXXRVSMFRTKFGFFVGRNFVPCAFRRWANIDSIPSSS 528
+ + R++M R+K GF GRN V C FRRW++ D+ SS+
Sbjct: 475 QAGGIVAEIG-SSNGGGGSRLAMIRSKLGFLAGRNLVTCTFRRWSHNDNASSST 527
>AT1G47056.1 | Symbols: VFB1 | VIER F-box proteine 1 |
chr1:17276103-17277659 REVERSE LENGTH=518
Length = 518
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/525 (48%), Positives = 338/525 (64%), Gaps = 20/525 (3%)
Query: 1 MGQSPSTPAPSPDHHRRDIFTTIDADFPNDSLIR-----DYTAEIPDECLAAIFHLLTTT 55
MGQS S S + RR T+ FP +S+ DYT+ +PDECLA +F L +
Sbjct: 1 MGQSTSAAGNSILNRRRSKSFTLK--FPIESIESEISQPDYTSSLPDECLALVFQFLNSG 58
Query: 56 DRKICSAVCRRWLRVDGENRRRLSLNAEASLLDAIPSLFSRFDSVTKLSLRCTRRATSIG 115
+RK C+ VCRRW+ V+G+NR RLSL+A + L+ +IPSLFSRFDSVTKLSL+C RR+ SIG
Sbjct: 59 NRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLKCDRRSVSIG 118
Query: 116 DDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSCMFGAKGVYAVI 175
D+ L+ ISLRC+ L+RLKLR CRE+T++GM FA NC K LK S GSC FGAKGV AV+
Sbjct: 119 DEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENC-KDLKIFSCGSCDFGAKGVKAVL 177
Query: 176 EHCTVLEELSVKRLRGVDGDGGESV-PGVSIEGVXXXXXXXXXXXXVNGHSFAPLIIGSK 234
+HC+ LEELS+KRLRG E + PGV+ + NG F P+I+G+K
Sbjct: 178 DHCSNLEELSIKRLRGFTDIAPEMIGPGVAASSLKSICLKEL----YNGQCFGPVIVGAK 233
Query: 235 KLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETLHLVKT 294
L++LKL RC GDWD L + + G+VEIHLE++QVSDV L+ +S C +LE+LHLVKT
Sbjct: 234 NLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSSLESLHLVKT 293
Query: 295 PECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMYPTSLS 354
PEC++ GL+ +AE+CK LRKLHIDGW+ N IGD+GL++VAK C LQELVLI + PT+LS
Sbjct: 294 PECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIGVNPTTLS 353
Query: 355 LAEIASNCQGLERFALCGIGTVGDADIECFAAKCGALKKMCIKGCPVSNAGIAAFASGCP 414
L +A+ C LER ALCG T GD ++ C AAKC AL+K+CIK CP+S+ GI A+GCP
Sbjct: 354 LGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENLANGCP 413
Query: 415 NXXXXXXXXXXXXTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSD--GGARETTMAFPP 472
G +WLR R L+ N D E E + +D GG++E + FP
Sbjct: 414 GLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENGIEFPQ 473
Query: 473 MDTQVNLADDAPXXXXXXXXXRVSMFRTKFGFFVGRNFVPCAFRR 517
+++Q+ R F++ G F G + VPC R+
Sbjct: 474 LNSQI-----MASSIASSSRNRSGYFKSGIGLFSGMSLVPCTSRQ 513
>AT3G50080.1 | Symbols: VFB2 | VIER F-box proteine 2 |
chr3:18572788-18574356 FORWARD LENGTH=522
Length = 522
Score = 483 bits (1243), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/538 (47%), Positives = 341/538 (63%), Gaps = 29/538 (5%)
Query: 1 MGQSPSTPAP-----------SPDHHRRDIFTTIDADFPNDSLIRDYTAEIPDECLAAIF 49
MGQ+PS+PA SP+ + D D+ D+TA +PD+CLA IF
Sbjct: 1 MGQAPSSPAEPNVRDTSLCLWSPEFLDCESIGFEDGDY-------DFTANLPDDCLAHIF 53
Query: 50 HLLTTTDRKICSAVCRRWLRVDGENRRRLSLNAEASLLDAIPSLFSRFDSVTKLSLRCTR 109
L+ DRK CS V +RWL VDG+NR RLSL+A++ +L +P +F+RFDSVTKL+LRC R
Sbjct: 54 QFLSAGDRKRCSLVSKRWLLVDGQNRHRLSLDAKSEILPFLPCIFNRFDSVTKLALRCDR 113
Query: 110 RATSIGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSCMFGAK 169
R+ S+ D+ L ++S+RC L R+KLRGCREIT++GM FARNC K+L+KLS GSC FGAK
Sbjct: 114 RSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNC-KSLRKLSCGSCTFGAK 172
Query: 170 GVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVXXXXXXXXXXXXVNGHSFAPL 229
G+ A++EHC VLEELS+KR+RG+ E + + + VNG F L
Sbjct: 173 GINAMLEHCKVLEELSLKRIRGLH----ELAEPIKL-SLSASLRSVFLKELVNGQVFGSL 227
Query: 230 IIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETL 289
+ ++ L+ +K+IRCLG+WD G NS L EI LE++QV+D+GL G+SKC NLETL
Sbjct: 228 V-ATRTLKKVKIIRCLGNWDRVFEMNGNGNSSLTEIRLERLQVTDIGLFGISKCSNLETL 286
Query: 290 HLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMY 349
H+VKTP+CS+ GL+ V ERCK+LRKLHIDGWR+ RIGD GL+SVAK+C NLQELVLI +
Sbjct: 287 HIVKTPDCSNLGLASVVERCKLLRKLHIDGWRVKRIGDQGLMSVAKHCLNLQELVLIGVD 346
Query: 350 PTSLSLAEIASNCQGLERFALCGIGTVGDADIECFAAKCGALKKMCIKGCPVSNAGIAAF 409
T +SL+ IASNC+ LER ALCG GT+GDA+I C A KC L+K CIKGC +S+ G+ A
Sbjct: 347 ATYMSLSAIASNCKKLERLALCGSGTIGDAEIGCIAEKCVTLRKFCIKGCLISDVGVQAL 406
Query: 410 ASGCPNXXXXXXXXXXXXTGEIVEWLREKRSSLAFNFDYSEVEPLDGNG-SDGGARETTM 468
A GCP TGE+ EWLRE+R +L + D E +G G DGG +
Sbjct: 407 ALGCPKLVKLKVKKCSLVTGEVREWLRERRMTLVVSMDDDET---NGVGLVDGGDQRVLE 463
Query: 469 AFPPMDTQVNLADDAPXXXXXXXXXRVSMFRTKFGFFVGRNFVPCAFRRWANIDSIPS 526
+ + D +++ +TK G GRN V C RRW+ ++ S
Sbjct: 464 TVVEEEAPPVIDGDGGLGVAGGGRLGLAILKTKLGLLAGRNLVACTLRRWSQSEATSS 521
>AT4G07400.1 | Symbols: VFB3 | VIER F-box proteine 3 |
chr4:4197847-4199511 REVERSE LENGTH=554
Length = 554
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/515 (48%), Positives = 322/515 (62%), Gaps = 12/515 (2%)
Query: 1 MGQSPSTPAPSPDHHRRDIFTTIDADFPNDSLIRDYTAEIPDECLAAIFHLLTTTDRKIC 60
MGQS S S + + DY + +PDECL+ IF LT D K C
Sbjct: 38 MGQSTSKFRRSKTTFTSPVLPNLREQNSGADEPYDYISNLPDECLSLIFQSLTCADLKRC 97
Query: 61 SAVCRRWLRVDGENRRRLSLNAEASLLDAIPSLFSRFDSVTKLSLRCTRRATSIGDDGLI 120
S VCRRWL ++G+ R RLSL A++ L+ IPSLF+RFDSVTKL LR RR+ I D+ +
Sbjct: 98 SLVCRRWLTIEGQCRHRLSLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFV 157
Query: 121 LISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSCMFGAKGVYAVIEHCTV 180
+IS+RC+ L RLKLRGC EI+++G++GF NC ++LKK+S GSC FG KG+ A++ C
Sbjct: 158 MISVRCRNLTRLKLRGCPEISDLGIIGFTENC-RSLKKVSFGSCGFGVKGMNALLNTCLG 216
Query: 181 LEELSVKRLRGVDGDGGESV-PGVSIEGVXXXXXXXXXXXXVNGHSFAPLIIGSKKLQTL 239
LEELSVKRLRG+ G G E + PG G NG FAPL+ G+K L+ L
Sbjct: 217 LEELSVKRLRGI-GAGAELIGPG----GAAGSLKVICLKELHNGQCFAPLLSGAKGLRIL 271
Query: 240 KLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETLHLVKTPECSD 299
K+ RC GDWD V + +VEIHLE++Q+SD+GL +SKC +E LHLVKTP+C++
Sbjct: 272 KIFRCSGDWDRVFEAVRDKVNAIVEIHLERIQMSDLGLTALSKCSGVEVLHLVKTPDCTN 331
Query: 300 SGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMYPTSLSLAEIA 359
GL+ VAERCK+LRKLHIDGW+ NRIGD+GLI VAK C NLQELVLI + PT LSL I
Sbjct: 332 VGLALVAERCKLLRKLHIDGWKTNRIGDEGLIVVAKYCWNLQELVLIGVNPTKLSLEAIV 391
Query: 360 SNCQGLERFALCGIGTVGDADIECFAAKCGALKKMCIKGCPVSNAGIAAFASGCPNXXXX 419
SNC LER ALCG TVGD ++ C A KC AL+K+CIK CP+++ GI A +GCPN
Sbjct: 392 SNCLNLERLALCGSDTVGDTELCCIAEKCLALRKLCIKNCPITDDGIKALGNGCPNLLKV 451
Query: 420 XXXXXXXXTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSDGGARETTMAFPPMDTQVNL 479
T + + LR++R+ L N D E ++G+ +GGA+E + FPP Q+
Sbjct: 452 KVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSVGEGGAQENAVEFPPSRLQIPT 511
Query: 480 ADDAPXXXXXXXXXRVSMFRTKFGFFVGRNFVPCA 514
A R S F+ + GF RNFV CA
Sbjct: 512 IGLA-----SGSTSRSSSFKLRLGFLSQRNFVSCA 541
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/445 (24%), Positives = 183/445 (41%), Gaps = 73/445 (16%)
Query: 40 IPDECLAAIFHLLTTT-DRKICSAVCRRWLRVDGENRRRLSLNAEASLLDAIPSLFSRFD 98
+P+E + IF L + +R CS VC+RWL ++ +R L + A S D I L RF
Sbjct: 11 LPEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRFL 70
Query: 99 SVTKLSL--------------------------------RCTRR---------ATSIGDD 117
+T + + + T + ++S+ D
Sbjct: 71 YITSIHVDERISVSLPSLSPSPKRKRGRDSSSPSSSKRKKLTDKTHSGAENVESSSLTDT 130
Query: 118 GLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSCMFGAKGVYAVIEH 177
GL ++ +E L L C ++ +G+ A+ C +LK L + C G +G+ AV +
Sbjct: 131 GLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKC-TSLKSLDLQGCYVGDQGLAAVGKF 189
Query: 178 CTVLEELSV-------------------KRLRGVDGDGGESVPGVSIEGV----XXXXXX 214
C LEEL++ K L+ + + +S+E V
Sbjct: 190 CKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVL 249
Query: 215 XXXXXXVNGHSFAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQ-VS 273
++ + G +L+ LKL +C+ D + VG + + L + L Q +
Sbjct: 250 YLDSEYIHDKGLIAVAQGCHRLKNLKL-QCVSVTDVAFAAVGELCTSLERLALYSFQHFT 308
Query: 274 DVGLAGVSK-CFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLIS 332
D G+ + K L+ L L S GL +A CK L ++ I+G + IG G+ +
Sbjct: 309 DKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGC--HNIGTRGIEA 366
Query: 333 VAKNCPNLQELVLIAMYPTSLS-LAEIASNCQGLERFALCGIGTVGDADIECFAAKCGAL 391
+ K+CP L+EL L+ S L EI C+ LE L +GD + A C L
Sbjct: 367 IGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNL 426
Query: 392 KKMCIKGC-PVSNAGIAAFASGCPN 415
KK+ I+ C + N GI + C +
Sbjct: 427 KKLHIRRCYEIGNKGIISIGKHCKS 451
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 16/321 (4%)
Query: 100 VTKLSLRCTRRATSIGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKL 159
+ L L+C S+ D + C LERL L + T+ GM + K LK L
Sbjct: 271 LKNLKLQCV----SVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKG-SKKLKDL 325
Query: 160 SVGSCMF-GAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVXXXXXXXXXX 218
++ C F KG+ A+ C LE + + G G + +
Sbjct: 326 TLSDCYFVSCKGLEAIAHGCKELERVEIN---GCHNIGTRGIEAIGKSCPRLKELALLYC 382
Query: 219 XXVNGHSFAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEK-VQVSDVGL 277
+ + + G K L+ L L+ C G D + ++ + L ++H+ + ++ + G+
Sbjct: 383 QRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGI 442
Query: 278 AGVSK-CFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKN 336
+ K C +L L L + + L + + C L++L++ G N+I D G+ ++A+
Sbjct: 443 ISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCS-LQQLNVSGC--NQISDAGITAIARG 499
Query: 337 CPNLQEL-VLIAMYPTSLSLAEIASNCQGLERFALCGIGTVGDADIECFAAKCGALKKMC 395
CP L L + + + LAE+ C L+ L + D + KC L+
Sbjct: 500 CPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCH 559
Query: 396 IKGCP-VSNAGIAAFASGCPN 415
+ CP +++AG+A S CP+
Sbjct: 560 MVYCPGITSAGVATVVSSCPH 580
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 12/222 (5%)
Query: 105 LRCTRRATSIGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSC 164
L C R IG+ L I CK LE L L C I +I M A+ C + LKKL + C
Sbjct: 380 LYCQR----IGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGC-RNLKKLHIRRC 434
Query: 165 M-FGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVXXXXXXXXXXXXVNG 223
G KG+ ++ +HC L ELS LR D G +++ + +G ++
Sbjct: 435 YEIGNKGIISIGKHCKSLTELS---LRFCDKVGNKALIAIG-KGCSLQQLNVSGCNQISD 490
Query: 224 HSFAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQ-VSDVGLAG-VS 281
+ G +L L + D L+ +G L ++ L ++D GL V
Sbjct: 491 AGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQ 550
Query: 282 KCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRIN 323
KC LET H+V P + +G++ V C ++K+ I+ W++
Sbjct: 551 KCKLLETCHMVYCPGITSAGVATVVSSCPHIKKVLIEKWKVT 592
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 142/315 (45%), Gaps = 19/315 (6%)
Query: 38 AEIPDECLAAIFHLLTTTDRKICSAVCRRWLRVDGENRRRLSLNAEASLLDAIPSLFSRF 97
A DE + L + D+++ VC+RWL + +R++L+ A +L L SRF
Sbjct: 9 ALTDDELRWVLSRLDSDKDKEVFGLVCKRWLNLQSTDRKKLAARAGPHML---RRLASRF 65
Query: 98 DSVTKLSLRCTRRAT---SIGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGK 154
+ +L L + + + D L +IS K L L L C+ IT+ G+ R C
Sbjct: 66 TQIVELDLSQSISRSFYPGVTDSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGR-CLS 124
Query: 155 TLKKLSVGSC-MFGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVXXXXX 213
L+ L V C KG+ AV E C L L + R + ES+ +S
Sbjct: 125 LLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFI---TDESLKSLSERCRDLEAL 181
Query: 214 XXXXXXXVNGHSFAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVS 273
+ A L+ G +K+++L + +C DA +S+V + + ++ L+ +
Sbjct: 182 GLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKT-LKLLDCY 240
Query: 274 DVGLAGVSK----CFNLETLHLVKTPECSDSGLSGVAERCK-MLRKLHIDGWRINRIGDD 328
VG +S C NLETL + + SD + +A+ CK L+ L +D W +N I D
Sbjct: 241 KVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRMD-WCLN-ISDS 298
Query: 329 GLISVAKNCPNLQEL 343
L + K C NL+ L
Sbjct: 299 SLSCILKQCKNLEAL 313
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 113/462 (24%), Positives = 191/462 (41%), Gaps = 93/462 (20%)
Query: 12 PDHHRRDIFTTIDADFPNDSLIRDYTAEIPDECLAAIFHLLT-TTDRKICSAVCRRWLRV 70
P R + TI + F + D +PDECL IF L+ +R C+ V ++WL +
Sbjct: 42 PSKRSRVVAPTIFSAFEKKPVSIDV---LPDECLFEIFRRLSGPQERSACAFVSKQWLTL 98
Query: 71 DGENRRR--------------------LSLNAEASL---LDAIPSLFSRFDSVTKLSLRC 107
R++ SL+ + + L AI + + KLS+R
Sbjct: 99 VSSIRQKEIDVPSKITEDGDDCEGCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRG 158
Query: 108 TRRA-------------------------TSIGDDGLILISLRCKGLERLKLRGCREITE 142
+ A ++I D+GL+ I+ C LE+L+L C IT+
Sbjct: 159 SNSAKVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITD 218
Query: 143 IGMVGFARNCGKTLKKLSVGSCM-FGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVP 201
G+V A++C L +L++ +C G +G+ A+ C+ L+ +S+K + P
Sbjct: 219 KGLVAIAKSC-PNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIK-----------NCP 266
Query: 202 GVSIEGVXXXXXXXXXXXXVNGHSFAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSG 261
V +G+ S A L KLQ L + D +L+ VG
Sbjct: 267 LVRDQGIASLLSNTTC-------SLAKL-----KLQMLNVT------DVSLAVVGHYGLS 308
Query: 262 LVEIHLEKV-QVSDVGLAGVSKCFNLETLHLVKTPEC---SDSGLSGVAERCKMLRKLHI 317
+ ++ L + VS+ G + L+ L+ + C +D GL V + C ++K I
Sbjct: 309 ITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQGVTDMGLESVGKGCPNMKKAII 368
Query: 318 DGWRINRIGDDGLISVAKNCPNLQELVLIAMY-PTSLSLAEIASNC-QGLERFALCGIGT 375
+ + D+GL+S AK +L+ L L + T NC + L+ F+L +
Sbjct: 369 SKSPL--LSDNGLVSFAKASLSLESLQLEECHRVTQFGFFGSLLNCGEKLKAFSLVNCLS 426
Query: 376 VGDADIECFAAK-CGALKKMCIKGCP-VSNAGIAAFASGCPN 415
+ D A+ C AL+ + I+ CP +A +AA CP
Sbjct: 427 IRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQ 468
>AT5G01720.1 | Symbols: | RNI-like superfamily protein |
chr5:267118-270391 REVERSE LENGTH=665
Length = 665
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 14/308 (4%)
Query: 88 DAIPSLFSRFDSVTKLSLRCTRRATSIGDDGLILISLRCKGLERLKLRGCREITEIGMVG 147
D + ++ + +S+ ++SL + S+ D+GL + ++ K L +L + CR+++ + +
Sbjct: 319 DGLKAIGTLCNSLKEVSLS---KCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQ 375
Query: 148 FARNCGKTLKKLSVGSCMFGAKGVYAVI-EHCTVLEELSVKRLRGVDGDGGESVPGVSIE 206
A +C L L + SC ++ + +I + C +LEEL + D + +
Sbjct: 376 IANSC-PLLVSLKMESCSLVSREAFWLIGQKCRLLEELDL-----TDNEIDDEGLKSISS 429
Query: 207 GVXXXXXXXXXXXXVNGHSFAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIH 266
+ + + + +G L+ L L R +G D +ST+ + L I+
Sbjct: 430 CLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETIN 489
Query: 267 LEKVQ-VSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRI 325
+ Q ++D L +SKC L+T P + GL+ +A RCK L K +D + I
Sbjct: 490 ISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAK--VDLKKCPSI 547
Query: 326 GDDGLISVAKNCPNLQELVLIAMYPTSLSLAEIASNCQGLERFALCGIGTVGDADIECFA 385
D GL+++A NL+++ + T + L +A N L+ A+ + + +
Sbjct: 548 NDAGLLALAHFSQNLKQINVSDTAVTEVGLLSLA-NIGCLQNIAVVNSSGLRPSGVAAAL 606
Query: 386 AKCGALKK 393
CG L+K
Sbjct: 607 LGCGGLRK 614
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 59/284 (20%)
Query: 134 LRGCREITEIGMVGFARNCGKTLKKLSVGSCMFGAK-GVYAVIEHCTVLEELSVKRLRGV 192
L C ++T+IGM+ ARNC LK L++ C F + AV + C L L ++ +
Sbjct: 332 LSRCVDVTDIGMISLARNC-LNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLI 390
Query: 193 DGDGGESVPGVSIEGVXXXXXXXXXXXXVNGHSFAPLIIGSKKLQTLKLIRCLGDWDATL 252
G +S+ S+ +Q L L C G
Sbjct: 391 TEKGLQSLGCYSM-----------------------------LVQELDLTDCYG------ 415
Query: 253 STVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKML 312
V+D GL +SKC NL+ L L SD G+ + +C L
Sbjct: 416 -------------------VNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKL 456
Query: 313 RKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMYPTSLSLAEIASNCQGLERFALCG 372
L +D +R GDDGL ++++ C +L L+L + + E + L L G
Sbjct: 457 --LELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRG 514
Query: 373 IGTVGDADIECFAAKCGALKKMCIKGCP-VSNAGIAAFASGCPN 415
+ + + A+ C L + +K C + ++G A A N
Sbjct: 515 LKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSKN 558
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 13/256 (5%)
Query: 110 RATSIGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSC-MFGA 168
R + D G+I ++ C L+ L L C +T++ + A++C + L L + SC +
Sbjct: 334 RCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSC-RNLGTLKLESCHLITE 392
Query: 169 KGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVXXXXXXXXXXXXVNGHSFAP 228
KG+ ++ + +++EL + GV+ G E + S N
Sbjct: 393 KGLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKCS------NLQRLKLGLCTNISDKGI 446
Query: 229 LIIGSK--KLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEK-VQVSDVGLAGVSKCFN 285
IGSK KL L L RC G D L+ + R L + L +++D G+ + +
Sbjct: 447 FHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLEL 506
Query: 286 LETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVL 345
L L L + GL+ +A CK L ++D I D G ++A NL+++ L
Sbjct: 507 LSHLELRGLKNITGVGLAAIASGCKKLG--YLDVKLCENIDDSGFWALAYFSKNLRQINL 564
Query: 346 IAMYPTSLSLAEIASN 361
+ +L + SN
Sbjct: 565 CNCSVSDTALCMLMSN 580
>AT3G07550.2 | Symbols: | RNI-like superfamily protein |
chr3:2409946-2411133 FORWARD LENGTH=395
Length = 395
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 62/375 (16%)
Query: 29 NDSLIRDYTAEIPDECLAAIFHLL-TTTDRKICSAVCRRWLRVDGENRRRLSLNAEASLL 87
+D+ + +PD+CL+ IF L + D C RWL + +RR L S+L
Sbjct: 7 SDNNVETSIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNIQNISRRSLQFQCSFSVL 66
Query: 88 DA--------------IPSLFSRFDSVTKLSLR-CTRRATS------------------- 113
+ + L +RF + LSL CT S
Sbjct: 67 NPSSLSQTNPDVSSHHLHRLLTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDC 126
Query: 114 ---IGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSC-MFGAK 169
I DDG+ I+ C L + L C I++IG+ AR +LK +++ C +
Sbjct: 127 CFGISDDGISTIASFCPNLSVVSLYRC-NISDIGLETLAR-ASLSLKCVNLSYCPLVSDF 184
Query: 170 GVYAVIEHCTVLEELSVKRLRGVDGDG----GESVPGVSIEGVXXXXXXXXXXXXVNGHS 225
G+ A+ + C LE + + + + G G ++ V + G
Sbjct: 185 GIKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIE 244
Query: 226 FAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQ-VSDVGLAGVSK-C 283
F + + C D + + S L ++L + V D + ++K C
Sbjct: 245 FL----------NISGVSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGC 294
Query: 284 FNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQEL 343
L+ +L E SG V + C+ L+KLH++ R + D GL+++ C NLQ L
Sbjct: 295 PLLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVN--RCRNLCDQGLLALRCGCMNLQIL 352
Query: 344 VL---IAMYPTSLSL 355
+ + PT++ +
Sbjct: 353 YMNGNARLTPTAIEM 367
>AT3G07550.1 | Symbols: | RNI-like superfamily protein |
chr3:2409946-2411133 FORWARD LENGTH=395
Length = 395
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 62/375 (16%)
Query: 29 NDSLIRDYTAEIPDECLAAIFHLL-TTTDRKICSAVCRRWLRVDGENRRRLSLNAEASLL 87
+D+ + +PD+CL+ IF L + D C RWL + +RR L S+L
Sbjct: 7 SDNNVETSIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNIQNISRRSLQFQCSFSVL 66
Query: 88 DA--------------IPSLFSRFDSVTKLSLR-CTRRATS------------------- 113
+ + L +RF + LSL CT S
Sbjct: 67 NPSSLSQTNPDVSSHHLHRLLTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDC 126
Query: 114 ---IGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSC-MFGAK 169
I DDG+ I+ C L + L C I++IG+ AR +LK +++ C +
Sbjct: 127 CFGISDDGISTIASFCPNLSVVSLYRC-NISDIGLETLAR-ASLSLKCVNLSYCPLVSDF 184
Query: 170 GVYAVIEHCTVLEELSVKRLRGVDGDG----GESVPGVSIEGVXXXXXXXXXXXXVNGHS 225
G+ A+ + C LE + + + + G G ++ V + G
Sbjct: 185 GIKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIE 244
Query: 226 FAPLIIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQ-VSDVGLAGVSK-C 283
F + + C D + + S L ++L + V D + ++K C
Sbjct: 245 FL----------NISGVSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGC 294
Query: 284 FNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQEL 343
L+ +L E SG V + C+ L+KLH++ R + D GL+++ C NLQ L
Sbjct: 295 PLLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVN--RCRNLCDQGLLALRCGCMNLQIL 352
Query: 344 VL---IAMYPTSLSL 355
+ + PT++ +
Sbjct: 353 YMNGNARLTPTAIEM 367
>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794842-8796882 REVERSE LENGTH=623
Length = 623
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 29/139 (20%)
Query: 271 QVSDVGLAGVSK-CFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDG 329
+V+DVGL V+ C +L + L P SD GLS +A C M+ KL + R I D G
Sbjct: 153 KVTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLS--RCPGITDSG 210
Query: 330 LISVAKNCPNLQELVLIAMYPTSLSLAEIASNCQGLERFALCGIGTVGDADIECFAAKCG 389
L+++A+NC NL +L + +C G VG+ + A +C
Sbjct: 211 LVAIAENCVNLSDLTI--------------DSCSG-----------VGNEGLRAIARRCV 245
Query: 390 ALKKMCIKGCP-VSNAGIA 407
L+ + I+ CP + + G+A
Sbjct: 246 NLRSISIRSCPRIGDQGVA 264
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 177/482 (36%), Gaps = 110/482 (22%)
Query: 40 IPDECLAAIFHLLTT-TDRKICSAVCRRWLRV------------------DGENRRRLSL 80
+P+ECL I L + +R C+ V + WL + +GE SL
Sbjct: 58 LPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEVNESSVQDVEEGEGFLSRSL 117
Query: 81 NAEASL---LDAIPSLFSRFDSVTKLSLRCT---RRATSIG------------------- 115
+ + L AI S + KL +R + + T +G
Sbjct: 118 EGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAVAHGCPSLRIVSLWNL 177
Query: 116 ----DDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVGSCM-FGAKG 170
D GL I+ C +E+L L C IT+ G+V A NC L L++ SC G +G
Sbjct: 178 PAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENC-VNLSDLTIDSCSGVGNEG 236
Query: 171 VYAVIEHCTVLEELSVKRLRGVDGDGGES-------------------VPGVSIE----- 206
+ A+ C L +S++ + GD G + V G+S+
Sbjct: 237 LRAIARRCVNLRSISIRSCPRI-GDQGVAFLLAQAGSYLTKVKLQMLNVSGLSLAVIGHY 295
Query: 207 GVXXXXXXXXXXXXVNGHSFAPL--IIGSKKLQTLKLIRCLGDWDATLSTVGRVNSGLVE 264
G VN F + G KKL++L ++ C G D L VG L
Sbjct: 296 GAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKH 355
Query: 265 IHLEK-VQVSDVGLAGVSK-CFNLETLHLVKTPECSDSGLSGVAERCKMLRK-------L 315
+ L K + VS GL ++K +LE+L L + + GL G C K L
Sbjct: 356 VSLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCL 415
Query: 316 HIDGWRINR--------------------IGDDGLISVAKNCPNLQELVLIAMY-PTSLS 354
I + GD L + K C LQ++ L + T
Sbjct: 416 GISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAG 475
Query: 355 LAE-IASNCQGLERFALCGIGTVGDADIECFAAKCG-ALKKMCIKGCP-VSNAGIAAFAS 411
+ E + SN GL + L V D + + G L+ + + GC ++NA + A A
Sbjct: 476 VRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAK 535
Query: 412 GC 413
C
Sbjct: 536 NC 537
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 12/164 (7%)
Query: 253 STVGRVNSGLVEIHLEKVQVSDVGLA-GVSKCFNLETLHLVKTPECSDSGLSGVAERCKM 311
S V GL +I + SD L+ +C NL+ L + +P +D+ ++ +A RC+
Sbjct: 82 SVVDWSEGGLTKIRVR--HCSDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRS 139
Query: 312 LRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMYPTSLSLAEIASNCQGLERFALC 371
L++L I + I D L+ + +NCPNL+ L M +S + + + E C
Sbjct: 140 LKELDIS--YCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPT-----EYLDAC 192
Query: 372 GIGTVGDADIECFAAKCGALKKMCIKGCPVSNAGIAAFASGCPN 415
GD + + L+ + I+ +S G+A+ GCP
Sbjct: 193 PQD--GDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPK 234
>AT1G80570.1 | Symbols: | RNI-like superfamily protein |
chr1:30290828-30292231 FORWARD LENGTH=467
Length = 467
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 144/355 (40%), Gaps = 48/355 (13%)
Query: 39 EIPDECLAAIF-HLLTTTDRKICSAVCRRWLRVDGENRRRLSLN---AEASLLDAIPSLF 94
E+PD + I L TT DR S C+R+ +D E R L + AS DA+ SL
Sbjct: 3 ELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLRIGCGLVPAS--DALLSLC 60
Query: 95 SRFDSVTKLSLRCTRRATSIG----DDGLILISLRCKGLERLKLRGCREITEIGMVGFAR 150
RF +++K+ + + + +G D GL++++ C L L L C IT++G +G
Sbjct: 61 RRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVG-IGHLS 119
Query: 151 NCGK-TLKKLSVGSCMFGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVX 209
+C + + KL+ + G GV ++ C L L + R V SV + G
Sbjct: 120 SCPELSSLKLNFAPRITGC-GVLSLAVGCKKLRRLHLIRCLNV-----ASVEWLEYFG-- 171
Query: 210 XXXXXXXXXXXVNGHSFAPLIIGS-KKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLE 268
+ L I + + + LI+ W S V++ + +
Sbjct: 172 ------------KLETLEELCIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVY 219
Query: 269 KVQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDD 328
+ + C +L L L GL+ V CK L KLH+D + D
Sbjct: 220 DQLDVERWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLD--MCTGVSDS 277
Query: 329 GLISVAKNCPNLQELVL-------------IAMYPTSLSLAEIASNCQGLERFAL 370
+I++ + +L+ + L I + T SL+ IA +C LE F +
Sbjct: 278 DIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKI 332
>AT1G80570.3 | Symbols: | RNI-like superfamily protein |
chr1:30290828-30292231 FORWARD LENGTH=467
Length = 467
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 144/355 (40%), Gaps = 48/355 (13%)
Query: 39 EIPDECLAAIF-HLLTTTDRKICSAVCRRWLRVDGENRRRLSLN---AEASLLDAIPSLF 94
E+PD + I L TT DR S C+R+ +D E R L + AS DA+ SL
Sbjct: 3 ELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLRIGCGLVPAS--DALLSLC 60
Query: 95 SRFDSVTKLSLRCTRRATSIG----DDGLILISLRCKGLERLKLRGCREITEIGMVGFAR 150
RF +++K+ + + + +G D GL++++ C L L L C IT++G +G
Sbjct: 61 RRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVG-IGHLS 119
Query: 151 NCGK-TLKKLSVGSCMFGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVX 209
+C + + KL+ + G GV ++ C L L + R V SV + G
Sbjct: 120 SCPELSSLKLNFAPRITGC-GVLSLAVGCKKLRRLHLIRCLNV-----ASVEWLEYFG-- 171
Query: 210 XXXXXXXXXXXVNGHSFAPLIIGS-KKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLE 268
+ L I + + + LI+ W S V++ + +
Sbjct: 172 ------------KLETLEELCIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVY 219
Query: 269 KVQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDD 328
+ + C +L L L GL+ V CK L KLH+D + D
Sbjct: 220 DQLDVERWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLD--MCTGVSDS 277
Query: 329 GLISVAKNCPNLQELVL-------------IAMYPTSLSLAEIASNCQGLERFAL 370
+I++ + +L+ + L I + T SL+ IA +C LE F +
Sbjct: 278 DIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKI 332
>AT1G80570.2 | Symbols: | RNI-like superfamily protein |
chr1:30290661-30292231 FORWARD LENGTH=480
Length = 480
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 144/355 (40%), Gaps = 48/355 (13%)
Query: 39 EIPDECLAAIF-HLLTTTDRKICSAVCRRWLRVDGENRRRLSLN---AEASLLDAIPSLF 94
E+PD + I L TT DR S C+R+ +D E R L + AS DA+ SL
Sbjct: 16 ELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLRIGCGLVPAS--DALLSLC 73
Query: 95 SRFDSVTKLSLRCTRRATSIG----DDGLILISLRCKGLERLKLRGCREITEIGMVGFAR 150
RF +++K+ + + + +G D GL++++ C L L L C IT++G +G
Sbjct: 74 RRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVG-IGHLS 132
Query: 151 NCGK-TLKKLSVGSCMFGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVX 209
+C + + KL+ + G GV ++ C L L + R V SV + G
Sbjct: 133 SCPELSSLKLNFAPRITGC-GVLSLAVGCKKLRRLHLIRCLNV-----ASVEWLEYFG-- 184
Query: 210 XXXXXXXXXXXVNGHSFAPLIIGS-KKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLE 268
+ L I + + + LI+ W S V++ + +
Sbjct: 185 ------------KLETLEELCIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVY 232
Query: 269 KVQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDD 328
+ + C +L L L GL+ V CK L KLH+D + D
Sbjct: 233 DQLDVERWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLD--MCTGVSDS 290
Query: 329 GLISVAKNCPNLQELVL-------------IAMYPTSLSLAEIASNCQGLERFAL 370
+I++ + +L+ + L I + T SL+ IA +C LE F +
Sbjct: 291 DIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKI 345
>AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein |
chr3:23273479-23276181 REVERSE LENGTH=594
Length = 594
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 240 KLIRCL-GDWDAT---LSTVGRVNSGLVEIHLEKVQVSDVGLAGV-SKCFNLETLHLVKT 294
K +RCL G WDA L V V S L ++L V L + +C L+ L ++
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
Query: 295 PECSDSGLSGVAERCKMLRKLHI---DGWRIN---RIGDDGLISVAKNCPNLQELVLIAM 348
E D+GL +A CK LR+L + + + + + + GL+SV+ CP L+ ++
Sbjct: 325 IE--DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382
Query: 349 YPTSLSLAEIASNCQGLERFALCGI 373
T+ +L IA N + RF LC I
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCII 407
>AT5G07670.1 | Symbols: | RNI-like superfamily protein |
chr5:2430421-2432065 FORWARD LENGTH=476
Length = 476
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 161/409 (39%), Gaps = 98/409 (23%)
Query: 29 NDSLIRDYTAEIPDECLAAIFHLLTTTDRKICSAVCRRWLRVDGENRRRLSLNAEASLLD 88
+ +L+ D+T +PD L + + + RK S VC+RW R+ G RL + + S +
Sbjct: 54 SKTLLPDFTLLLPDLILIRVIQKIPNSQRKNLSLVCKRWFRLHG----RLVRSFKVSDWE 109
Query: 89 AIPS--LFSRFDSVTKLSLRC-------------------------TRRATSIGDDGLIL 121
+ S L SRF ++ + L + ++ S ++ L+
Sbjct: 110 FLSSGRLISRFPNLETVDLVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFEENLLS 169
Query: 122 ISLRCKGLERLKLRGCREI--------TEIGMVGFARNCGKTLKKLSVGSCMFGAKGVYA 173
+ L +GL+ L GC + +E+G++ A C + L++L + C +
Sbjct: 170 VELVERGLKALA-GGCSNLRKLVVTNTSELGLLNVAEECSR-LQELELHKCS------DS 221
Query: 174 VIEHCTVLEELSVKRLRG-VDGDGGESVPGVSIEGVXXXXXXXXXXXXVNGHSFAPLIIG 232
V+ E L + RL G VDG V + + L G
Sbjct: 222 VLLGIGAFENLQILRLVGNVDGLYNSLVSDIGL---------------------MILAQG 260
Query: 233 SKKLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETLHLV 292
K+L L+L+ C G +D + +G L E+ + ++ L G+ C NL+TL LV
Sbjct: 261 CKRLVKLELVGCEGGFDG-IKEIGECCQMLEELTVCDNKMESGWLGGLRYCENLKTLKLV 319
Query: 293 KTPECSDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIAMYPTS 352
+ + ++ C L +L ++ ++ + + ++ K C +E+V
Sbjct: 320 SCKKIDNDPDESLSCCCPALERLQLEKCQLR--DKNTVKALFKMCEAAREIVF------- 370
Query: 353 LSLAEIASNCQGLERFALCGIGTVGDADIECFAAKCGALKKMCIKGCPV 401
+C GL D DI A G +K + ++GC +
Sbjct: 371 -------QDCWGL------------DNDIFSLAMAFGRVKLLYLEGCSL 400
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 235 KLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEK-VQVSDVGLAGVSK-CFNLETLHLV 292
+LQ L L + D +L ++ R + L +++L SD LA +++ C L+ L+L
Sbjct: 118 ELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLC 177
Query: 293 KTPEC-SDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIA-MYP 350
E SD+ L + E C L+ L++ GW N I DDG++S+A CP+L+ L L + +
Sbjct: 178 GCVEAVSDNTLQAIGENCNQLQSLNL-GWCEN-ISDDGVMSLAYGCPDLRTLDLCSCVLI 235
Query: 351 TSLSLAEIASNCQGLERFAL 370
T S+ +A+ C L L
Sbjct: 236 TDESVVALANRCIHLRSLGL 255
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 235 KLQTLKLIRCLGDWDATLSTVGRVNSGLVEIHLEK-VQVSDVGLAGVSK-CFNLETLHLV 292
+LQ L L + D +L ++ R + L +++L SD LA +++ C L+ L+L
Sbjct: 118 ELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLC 177
Query: 293 KTPEC-SDSGLSGVAERCKMLRKLHIDGWRINRIGDDGLISVAKNCPNLQELVLIA-MYP 350
E SD+ L + E C L+ L++ GW N I DDG++S+A CP+L+ L L + +
Sbjct: 178 GCVEAVSDNTLQAIGENCNQLQSLNL-GWCEN-ISDDGVMSLAYGCPDLRTLDLCSCVLI 235
Query: 351 TSLSLAEIASNCQGLERFAL 370
T S+ +A+ C L L
Sbjct: 236 TDESVVALANRCIHLRSLGL 255
>AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 |
chr3:9868342-9870464 FORWARD LENGTH=575
Length = 575
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 155/409 (37%), Gaps = 89/409 (21%)
Query: 40 IPDECLAAIFHLLTT-TDRKICSAVCRRWLRVDGENRRRL------SLNAEASLLDAIPS 92
PDE + +F +T+ DR S VC+ W +++ +R+++ ++N E LL P
Sbjct: 4 FPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPE-RLLRRFPC 62
Query: 93 L----------FSRFDSV-----------------TKLSLRCTR-RATSIGDDGLILISL 124
L F+ F+ V +++ L R + + D+ L L+S
Sbjct: 63 LKSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLELLSR 122
Query: 125 RCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLSVG-----------------SCMFG 167
+ L L C T G+ A NC + L+ L + +C
Sbjct: 123 SFVNFKSLVLVSCEGFTTDGLASIAANC-RHLRDLDLQENEIDDHRGQWLSCFPDTCTTL 181
Query: 168 AKGVYAVIE---HCTVLEEL--------SVKRLRGVDGDGGESVPGVSIEGVXXXXXXXX 216
+A +E + LE L S+K R V D + + + V
Sbjct: 182 VTLNFACLEGETNLVALERLVARSPNLKSLKLNRAVPLDALARLMACAPQIVDLGVGSYE 241
Query: 217 XXXXVNGHSFAPLIIGSKKLQTLKLI--------RCLGDWDATLSTVGRVN-SGLVEIHL 267
+ S+ L+ KK +L+ + CL + + +N S EIH
Sbjct: 242 NDP--DSESYLKLMAVIKKCTSLRSLSGFLEAAPHCLSAFHPICHNLTSLNLSYAAEIHG 299
Query: 268 EKVQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHID-----GWRI 322
+ + + C L+ L ++ + D GL VA CK L++L + G
Sbjct: 300 SHL------IKLIQHCKKLQRLWILDS--IGDKGLEVVASTCKELQELRVFPSDLLGGGN 351
Query: 323 NRIGDDGLISVAKNCPNLQELVLIAMYPTSLSLAEIASNCQGLERFALC 371
+ ++GL++++ CP L ++ T+ +L +A NC RF LC
Sbjct: 352 TAVTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLC 400