Miyakogusa Predicted Gene

Lj4g3v0783230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0783230.1 tr|Q84LR0|Q84LR0_SOLLC Metal transporter
OS=Solanum lycopersicum GN=NRAMP3 PE=2 SV=1,73.33,2e-19,Nramp,Natural
resistance-associated macrophage protein; NATURAL
RESISTANCE-ASSOCIATED MACROPHAGE PRO,CUFF.48044.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | natural resistance-ass...   111   1e-25
AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | natural resistance ass...   110   3e-25
AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion transp...   101   1e-22
AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP metal ion transp...    94   3e-20
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transp...    54   2e-08
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resista...    52   7e-08

>AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | natural
           resistance-associated macrophage protein 3 |
           chr2:9856422-9858565 REVERSE LENGTH=509
          Length = 509

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 58/60 (96%)

Query: 1   MAELCREEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITALD 60
           +AELCR+EYPTWARMVLW MAE+ LIGSDIQEVIGSAIAI++LSNG++PLWAGVVITALD
Sbjct: 119 LAELCRDEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALD 178


>AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | natural resistance
           associated macrophage protein 4 | chr5:26861822-26863580
           FORWARD LENGTH=512
          Length = 512

 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 58/60 (96%)

Query: 1   MAELCREEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITALD 60
           +AELCREEYPTWARMVLW MAE+ LIG+DIQEVIGSAIAI++LSNG++PLWAGVVITALD
Sbjct: 115 LAELCREEYPTWARMVLWIMAEIALIGADIQEVIGSAIAIKILSNGLVPLWAGVVITALD 174


>AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion
           transporter 2 | chr1:17309043-17311308 REVERSE
           LENGTH=530
          Length = 530

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 55/60 (91%)

Query: 1   MAELCREEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITALD 60
           +AELCR+EYPTWAR VLW+MAE+ LIG+DIQEVIGSAIAI++LS G +PLWAGVVITA D
Sbjct: 131 LAELCRDEYPTWARYVLWSMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITASD 190


>AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP metal ion
           transporter family protein | chr4:10317785-10319660
           REVERSE LENGTH=530
          Length = 530

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 53/60 (88%)

Query: 1   MAELCREEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITALD 60
           +AE+CR EYP+WAR++LW MAEV LIG+DIQEVIGSAIA+++L+ G +P+W GV+IT+ D
Sbjct: 133 LAEICRSEYPSWARILLWFMAEVALIGADIQEVIGSAIALQILTRGFLPIWVGVIITSFD 192


>AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion
           transporter 6 | chr1:5482202-5485066 REVERSE LENGTH=527
          Length = 527

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 1   MAELCREEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITAL 59
           +AE CR EY      +LW +AE+ ++  DI EVIG+A A+ +L N  +P+W GV++T L
Sbjct: 101 LAEHCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFN--IPVWIGVLLTGL 157


>AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural
           resistance-associated macrophage protein 1 |
           chr1:30373066-30375644 REVERSE LENGTH=532
          Length = 532

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 1   MAELCREEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITAL 59
           +AE CR EY      +LW +AE+ ++  DI EVIG+A A+ +L +  +P+W GV++T L
Sbjct: 109 LAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFS--IPVWIGVLLTGL 165