Miyakogusa Predicted Gene

Lj4g3v0771140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0771140.1 Non Chatacterized Hit- tr|Q2QZQ1|Q2QZQ1_ORYSJ
Retrotransposon protein, putative, Ty3-gypsy subclass
,31.88,0.00000000000002,POPLD,POPLD,CUFF.48051.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47300.2 | Symbols:  | ribonuclease Ps | chr2:19418733-194220...   278   3e-75
AT2G47300.3 | Symbols:  | ribonuclease Ps | chr2:19419333-194220...   278   6e-75

>AT2G47300.2 | Symbols:  | ribonuclease Ps | chr2:19418733-19422076
           FORWARD LENGTH=826
          Length = 826

 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/357 (43%), Positives = 217/357 (60%), Gaps = 25/357 (7%)

Query: 41  WSIILPLSWVKAFWIPLISNGAHAIGLREKHWIACEIELPSFHSDFPDCKAYSCEMAAKD 100
           WS+ILPLSW+K FW   +S GAHAIG REK W++C+  LP F SDFPDCKAYS    ++ 
Sbjct: 490 WSLILPLSWIKVFWNAFVSKGAHAIGQREKRWVSCDDGLPFFPSDFPDCKAYSSFTLSEA 549

Query: 101 AVFNKKEELRQPSVRHFKVPIVPPWGIVRTTFNKEISAMDTLDLSTREDLTSANSLPISF 160
           A   +K + R P++R F++PI PPW  +  T                  +   ++   S 
Sbjct: 550 ADLEEKAQRRPPAIRPFRIPIPPPWNSIHVT----------------RSIGEGSNQKFSS 593

Query: 161 SGSSKISNFNCMNNSFDGTIARTGNMLTTFINETKAGQLLLFPHVAE--GKDIISKFIKG 218
           +G S +   +   N FDG +ART + LTTF+    +  +LLFPH       D++    + 
Sbjct: 594 NGRSVVEISSYGGNLFDGIVARTSDSLTTFLQTFTSDNMLLFPHNTSKPSTDLMMTLQED 653

Query: 219 EQNLDL-MHKSSVIYDHKLCFLRVILHPFKEGFFEEGAVICAPCLSDISMW-TXXXXXXX 276
           ++ +   +H+SS    +KLC +RV+LH FKEG FEEGAV+CAP L+DIS+  +       
Sbjct: 654 DKKVRAQIHQSS----NKLCLVRVLLHAFKEGSFEEGAVVCAPTLADISLLKSSCSEGED 709

Query: 277 XXXXXXXXAMKLYFKEHSSGKWGMQIPEDSIARASHRWPIGFVTTASVQGSKRLVAEGFC 336
                   ++  YF+E   G W + +PED++   SHRWPIGFVTT  V+GSK+  AE FC
Sbjct: 710 GRVTIPQSSVSSYFQEQPCGTWELNVPEDTLTEQSHRWPIGFVTTGFVRGSKKPAAEAFC 769

Query: 337 EAVLLSHLREEQWKEMPVKQRRREIYVLVWNLRSVAYRLALASVVLENQK-TDVEFF 392
           +AVLL  LR+EQW++  V++R+++IYVLV NLRS A+RLALA++VLE Q   DV  F
Sbjct: 770 DAVLLGRLRDEQWRDKDVRRRKKQIYVLVRNLRSSAFRLALATIVLEQQDYCDVHCF 826


>AT2G47300.3 | Symbols:  | ribonuclease Ps | chr2:19419333-19422076
           FORWARD LENGTH=659
          Length = 659

 Score =  278 bits (710), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 155/357 (43%), Positives = 217/357 (60%), Gaps = 25/357 (7%)

Query: 41  WSIILPLSWVKAFWIPLISNGAHAIGLREKHWIACEIELPSFHSDFPDCKAYSCEMAAKD 100
           WS+ILPLSW+K FW   +S GAHAIG REK W++C+  LP F SDFPDCKAYS    ++ 
Sbjct: 323 WSLILPLSWIKVFWNAFVSKGAHAIGQREKRWVSCDDGLPFFPSDFPDCKAYSSFTLSEA 382

Query: 101 AVFNKKEELRQPSVRHFKVPIVPPWGIVRTTFNKEISAMDTLDLSTREDLTSANSLPISF 160
           A   +K + R P++R F++PI PPW  +  T                  +   ++   S 
Sbjct: 383 ADLEEKAQRRPPAIRPFRIPIPPPWNSIHVT----------------RSIGEGSNQKFSS 426

Query: 161 SGSSKISNFNCMNNSFDGTIARTGNMLTTFINETKAGQLLLFPHVAE--GKDIISKFIKG 218
           +G S +   +   N FDG +ART + LTTF+    +  +LLFPH       D++    + 
Sbjct: 427 NGRSVVEISSYGGNLFDGIVARTSDSLTTFLQTFTSDNMLLFPHNTSKPSTDLMMTLQED 486

Query: 219 EQNLDL-MHKSSVIYDHKLCFLRVILHPFKEGFFEEGAVICAPCLSDISMW-TXXXXXXX 276
           ++ +   +H+SS    +KLC +RV+LH FKEG FEEGAV+CAP L+DIS+  +       
Sbjct: 487 DKKVRAQIHQSS----NKLCLVRVLLHAFKEGSFEEGAVVCAPTLADISLLKSSCSEGED 542

Query: 277 XXXXXXXXAMKLYFKEHSSGKWGMQIPEDSIARASHRWPIGFVTTASVQGSKRLVAEGFC 336
                   ++  YF+E   G W + +PED++   SHRWPIGFVTT  V+GSK+  AE FC
Sbjct: 543 GRVTIPQSSVSSYFQEQPCGTWELNVPEDTLTEQSHRWPIGFVTTGFVRGSKKPAAEAFC 602

Query: 337 EAVLLSHLREEQWKEMPVKQRRREIYVLVWNLRSVAYRLALASVVLENQK-TDVEFF 392
           +AVLL  LR+EQW++  V++R+++IYVLV NLRS A+RLALA++VLE Q   DV  F
Sbjct: 603 DAVLLGRLRDEQWRDKDVRRRKKQIYVLVRNLRSSAFRLALATIVLEQQDYCDVHCF 659