Miyakogusa Predicted Gene

Lj4g3v0770770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0770770.1 Non Chatacterized Hit- tr|D7MV47|D7MV47_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.56,5e-18,seg,NULL,CUFF.48021.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67390.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   3e-14
AT5G67390.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   3e-14
AT1G69360.1 | Symbols:  | Plant protein of unknown function (DUF...    54   5e-08
AT1G26620.1 | Symbols:  | Plant protein of unknown function (DUF...    51   5e-07
AT5G07790.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    50   8e-07
AT5G07790.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    50   8e-07

>AT5G67390.2 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: Plant protein of unknown
          function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast
          hits to 186 proteins in 18 species: Archae - 0;
          Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170;
          Viruses - 0; Other Eukaryotes - 16 (source: NCBI
          BLink). | chr5:26887883-26888512 REVERSE LENGTH=176
          Length = 176

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 1  MEKPIRSCDKEYMRMAMLKHEETFKEQVYELHRLYRIQKILMKNMEARR 49
          MEK +   DK+ M+MAMLKHEETFK+QVYELHRLY++QKILMKNME  +
Sbjct: 1  MEKLLNPYDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINK 49


>AT5G67390.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: Plant protein of unknown
          function (DUF863) (TAIR:AT1G69360.1); Has 1807 Blast
          hits to 1807 proteins in 277 species: Archae - 0;
          Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
          Viruses - 0; Other Eukaryotes - 339 (source: NCBI
          BLink). | chr5:26887883-26888512 REVERSE LENGTH=176
          Length = 176

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 1  MEKPIRSCDKEYMRMAMLKHEETFKEQVYELHRLYRIQKILMKNMEARR 49
          MEK +   DK+ M+MAMLKHEETFK+QVYELHRLY++QKILMKNME  +
Sbjct: 1  MEKLLNPYDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINK 49


>AT1G69360.1 | Symbols:  | Plant protein of unknown function
           (DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896
          Length = 896

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 4   PIRSCDKEYMRMAMLKHEETFKEQVYELHRLYRIQKILMKNMEARRGIEVSYFNN 58
           P  S ++++++  ML+HE  FK QVYELHRLYR QK LM  ++ +  ++  + NN
Sbjct: 51  PTDSYERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVKGKNFVD--HLNN 103


>AT1G26620.1 | Symbols:  | Plant protein of unknown function
          (DUF863) | chr1:9195838-9198719 REVERSE LENGTH=867
          Length = 867

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 34/45 (75%)

Query: 9  DKEYMRMAMLKHEETFKEQVYELHRLYRIQKILMKNMEARRGIEV 53
          +K++M+  ML+HE  FK QV+ELHRLYR+QK L++ ++ +   EV
Sbjct: 14 EKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVKGKNLNEV 58


>AT5G07790.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G61300.1). |
           chr5:2484073-2486107 FORWARD LENGTH=616
          Length = 616

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 10  KEYMRMAMLKHEETFKEQVYELHRLYRIQKILMKNMEARRGIEVSYFNNAISL 62
           KE +R  ML HE  F+ Q+ ELHRLYR QK LM  ME  R  +  Y N+ + +
Sbjct: 59  KEALRHTMLVHESVFESQICELHRLYRKQKELMMEMEETRHNKALYLNSGLPI 111


>AT5G07790.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G61300.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:2484073-2486107
           FORWARD LENGTH=616
          Length = 616

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 10  KEYMRMAMLKHEETFKEQVYELHRLYRIQKILMKNMEARRGIEVSYFNNAISL 62
           KE +R  ML HE  F+ Q+ ELHRLYR QK LM  ME  R  +  Y N+ + +
Sbjct: 59  KEALRHTMLVHESVFESQICELHRLYRKQKELMMEMEETRHNKALYLNSGLPI 111