Miyakogusa Predicted Gene

Lj4g3v0731780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0731780.1 Non Chatacterized Hit- tr|C6T253|C6T253_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,40.79,0.00000000000006,seg,NULL; VQ,VQ,CUFF.47962.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22880.1 | Symbols:  | VQ motif-containing protein | chr2:974...    53   1e-07
AT4G37710.1 | Symbols:  | VQ motif-containing protein | chr4:177...    49   2e-06

>AT2G22880.1 | Symbols:  | VQ motif-containing protein |
           chr2:9741119-9741463 REVERSE LENGTH=114
          Length = 114

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 32  YQSHSLLHSVRKTPAKSWKKKLPVAPMPPTPVKIYKVDPINFRELVQQLTCAPEFKPS-H 90
           +  +S LHS RK PAK WKK +   P    P K+Y+V+P+NF+ELVQ+LT A + +   H
Sbjct: 9   FSHNSSLHSTRKQPAKPWKKPVTGLPQRMHP-KVYRVEPVNFKELVQRLTGAEDVEQEVH 67

Query: 91  QPHEQVLQSIENATT 105
           Q   + ++  ++ TT
Sbjct: 68  QVEAKPVKISDDTTT 82


>AT4G37710.1 | Symbols:  | VQ motif-containing protein |
           chr4:17718234-17718605 FORWARD LENGTH=123
          Length = 123

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 11/75 (14%)

Query: 38  LHSVRKTPAKSWKKKLPVAPMPPTPVKIYKVDPINFRELVQQLTCAPEFKPSHQPHEQV- 96
           LHS RK P+K  K+    +P+ P    +Y+V+P+NF+ LVQ+LT APE       HE V 
Sbjct: 31  LHSTRKQPSKPLKRPAISSPLNPMHPHVYRVEPVNFKVLVQRLTGAPE-------HETVQ 83

Query: 97  ---LQSIENATTNSS 108
              L++ ++A   SS
Sbjct: 84  AKPLKTSDDAAKQSS 98