Miyakogusa Predicted Gene

Lj4g3v0720730.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0720730.2 tr|F0YQM0|F0YQM0_AURAN Selenoprotein (Fragment)
OS=Aureococcus anophagefferens GN=Hypo5 PE=4
SV=1,36.84,5e-19,AhpC-TSA_2,NULL,CUFF.47959.2
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65840.1 | Symbols:  | Thioredoxin superfamily protein | chr5...   312   9e-86
AT2G37240.1 | Symbols:  | Thioredoxin superfamily protein | chr2...    99   3e-21

>AT5G65840.1 | Symbols:  | Thioredoxin superfamily protein |
           chr5:26344097-26346057 REVERSE LENGTH=275
          Length = 275

 Score =  312 bits (800), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 145/196 (73%), Positives = 163/196 (83%)

Query: 22  SNSEYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPCCWELASTLK 81
           S ++Y   I E LGDVSIFTA+GQ V F DLWDQ  G+A V LLRHFGC CCWELA+ LK
Sbjct: 80  SFTDYREDIGEILGDVSIFTASGQRVQFSDLWDQKDGIAAVVLLRHFGCVCCWELATALK 139

Query: 82  ESKARFDSAGVKLIAVGVGAPDKARMLAERLPFPMDCLYADPDRKAYDTLDLYYGFGRTF 141
           E+K RFD+AGVKLIAVGVG PDKAR+LA RLPFPM+CLYADP+RKAYD L LY+G GRTF
Sbjct: 140 EAKPRFDAAGVKLIAVGVGTPDKARILATRLPFPMECLYADPERKAYDVLGLYFGLGRTF 199

Query: 142 FNPASSKVLSRFDALRKAVKNYTIEATPDDRSGVLQQGGMFVFRGKELVYARKDEGTGDH 201
           FNPAS+KV SRF  +R+A KNYTIEATP+DRS VLQQGG FVFRGK+L+Y RKDEGTGDH
Sbjct: 200 FNPASTKVFSRFSEIREATKNYTIEATPEDRSSVLQQGGTFVFRGKKLLYGRKDEGTGDH 259

Query: 202 APLDDVFDVCCKVPVA 217
             LDDV +VCCK  VA
Sbjct: 260 PSLDDVINVCCKATVA 275


>AT2G37240.1 | Symbols:  | Thioredoxin superfamily protein |
           chr2:15640235-15641720 REVERSE LENGTH=248
          Length = 248

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 13/208 (6%)

Query: 13  RTDASVVRA-----SNSEYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRH 67
           R  A VV A     S +       ++L  V +    G  +   DLW   +  AVVA  RH
Sbjct: 45  RRSAVVVSAITGASSGAGIGKGTADSLDTVKVLDLRGNEIPISDLWKDRK--AVVAFARH 102

Query: 68  FGCPCCWELASTLKESKARFDSAGVKLIAVGVGAPDKARMLAERLPFPMDCLYADPDRKA 127
           FGC  C + A+ L E K   D++GV L+ +G G+ D+A    E+  F  + +YADP+  +
Sbjct: 103 FGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQTKFKGE-VYADPNHAS 161

Query: 128 YDTLDLYYGFGRTFFNPASSKVL-SRFDALRKAVKNYTIEATPDDRSGVLQQGGMFVFR- 185
           Y+ L+   G   TF   A+ K+L S  +  R+  K   ++ T +   G  QQGG+ V   
Sbjct: 162 YEALEFVSGVSVTFTPKAAMKILESYMEGYRQDWKLSFMKDTVE--RGGWQQGGILVAGP 219

Query: 186 GKE-LVYARKDEGTGDHAPLDDVFDVCC 212
           GK+ + Y RKD+  GD  P++++   CC
Sbjct: 220 GKDNISYIRKDKEAGDDPPVEEILKACC 247