Miyakogusa Predicted Gene

Lj4g3v0720730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0720730.1 tr|B9IBM8|B9IBM8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_571999 PE=4
SV=1,78.85,5e-17,seg,NULL,CUFF.47959.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65840.1 | Symbols:  | Thioredoxin superfamily protein | chr5...    74   3e-14

>AT5G65840.1 | Symbols:  | Thioredoxin superfamily protein |
           chr5:26344097-26346057 REVERSE LENGTH=275
          Length = 275

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 37/51 (72%)

Query: 60  SNSEYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPC 110
           S ++Y   I E LGDVSIFTA+GQ V F DLWDQ  G+A V LLRHFGC C
Sbjct: 80  SFTDYREDIGEILGDVSIFTASGQRVQFSDLWDQKDGIAAVVLLRHFGCVC 130