Miyakogusa Predicted Gene

Lj4g3v0685340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0685340.1 Non Chatacterized Hit- tr|I1JUZ3|I1JUZ3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,54.43,1e-18,
,CUFF.47931.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   109   6e-25
AT5G10310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    61   2e-10
AT3G13898.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...    58   2e-09
AT2G30370.1 | Symbols: CHAL, EPFL6 | allergen-related | chr2:129...    47   4e-06
AT2G30370.2 | Symbols: CHAL, EPFL6 | allergen-related | chr2:129...    46   6e-06

>AT4G37810.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits
           to 149 proteins in 15 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:17780970-17781544 FORWARD LENGTH=128
          Length = 128

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 8/106 (7%)

Query: 34  LVTEGRKTHNKQSGFDQKVSEDNKMLLRAQIGSRPPKCER-RCRSCGHCEAIQVPTNPQV 92
           L+  GR   +    F +   +D KM++R  IGSRPP+CER RCRSCGHCEAIQVPTNPQ 
Sbjct: 24  LMANGRPEPDSVE-FTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHCEAIQVPTNPQT 82

Query: 93  Q------NGKINSSKFSRIAYAKGDYSSNYKPMSWKCKCGNLIFNP 132
           +          +SS+   + Y +GD S+NYKPMSWKCKCGN I+NP
Sbjct: 83  KLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128


>AT5G10310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 17 plant structures; EXPRESSED
           DURING: 10 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G13898.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:3241666-3242127 REVERSE
           LENGTH=122
          Length = 122

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 20/85 (23%)

Query: 61  RAQIGSRPPKCERRCRSCGHCEAIQVPTNPQVQNGKINSSKFSRIAYAKG---------- 110
           +A++GS PP C  RC +C  C AIQVPT P         S+F+R+    G          
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLP-------TRSRFTRVNPFSGGFVRPPSSLT 97

Query: 111 ---DYSSNYKPMSWKCKCGNLIFNP 132
              D  SNYKPM WKC C    +NP
Sbjct: 98  TVLDQYSNYKPMGWKCHCNGHFYNP 122


>AT3G13898.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G10310.1). |
           chr3:4584011-4584334 FORWARD LENGTH=107
          Length = 107

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 17/114 (14%)

Query: 15  FVCISLFFLIFSSWIQQG---LLVTEGRKTHNKQSGFDQKVSEDNKMLLRAQIGSRPPKC 71
           F+ +S FF +F   I  G   ++  +  + ++++   +   +++  +  R +IGS+PP C
Sbjct: 5   FLLMSKFFFVFPIIIYIGPAEIIKPQAAEENSRRRILNPNENKEEIVKRRRRIGSKPPSC 64

Query: 72  ERRCRSCGHCEAIQVPTNPQVQNGKINSSKFSRIAYAKGDYSSNYKPMSWKCKC 125
           E++C  C  CEAIQ PT              S I +    Y +NY+P  W+C C
Sbjct: 65  EKKCYGCEPCEAIQFPT-------------ISSIPHLSPHY-ANYQPEGWRCHC 104


>AT2G30370.1 | Symbols: CHAL, EPFL6 | allergen-related |
           chr2:12940577-12942167 REVERSE LENGTH=230
          Length = 230

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 24/102 (23%)

Query: 35  VTEGRKT----HNKQSGFDQKVSEDNKMLLRAQIGSRPPKCERRCRSCGHCEAIQVPTNP 90
           V EG+ T      ++ G   K +E  ++L    +GS PP+C  +C  C  C+ + VP  P
Sbjct: 149 VEEGKSTVVIKKTRKIGDRSKEAELRRIL--RGLGSSPPRCSSKCGRCTPCKPVHVPVPP 206

Query: 91  QVQNGKINSSKFSRIAYAKGDYSSNYKPMSWKCKCGNLIFNP 132
                                 ++ Y P +W+CKCGN ++ P
Sbjct: 207 GTP------------------VTAEYYPEAWRCKCGNKLYMP 230


>AT2G30370.2 | Symbols: CHAL, EPFL6 | allergen-related |
           chr2:12940577-12942167 REVERSE LENGTH=156
          Length = 156

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 19/84 (22%)

Query: 49  DQKVSEDNKMLLRAQIGSRPPKCERRCRSCGHCEAIQVPTNPQVQNGKINSSKFSRIAYA 108
           D+    + + +LR  +GS PP+C  +C  C  C+ + VP  P                  
Sbjct: 92  DRSKEAELRRILRG-LGSSPPRCSSKCGRCTPCKPVHVPVPPGT---------------- 134

Query: 109 KGDYSSNYKPMSWKCKCGNLIFNP 132
               ++ Y P +W+CKCGN ++ P
Sbjct: 135 --PVTAEYYPEAWRCKCGNKLYMP 156