Miyakogusa Predicted Gene
- Lj4g3v0685320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0685320.1 CUFF.47932.1
(777 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22795.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 108 1e-23
AT4G37820.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 105 9e-23
AT4G33740.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 87 4e-17
AT4G33740.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 87 4e-17
AT4G33740.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 87 4e-17
>AT2G22795.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37820.1); Has 799854 Blast hits to 188815
proteins in 4452 species: Archae - 4529; Bacteria -
144236; Metazoa - 287749; Fungi - 87083; Plants -
43826; Viruses - 3662; Other Eukaryotes - 228769
(source: NCBI BLink). | chr2:9697380-9699584 REVERSE
LENGTH=734
Length = 734
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 4/73 (5%)
Query: 1 MFRLSPRRSQRSKGFKVKHALQICVLLGVCIWLVYQIKHTNEKKASYGESAKT----GND 56
MFR SPRR QRSKGFKVKH +Q+ +LL V IWL+YQ+KH++EKKA + ESAK +
Sbjct: 1 MFRSSPRRGQRSKGFKVKHCIQLTLLLSVGIWLLYQVKHSHEKKAQFEESAKIVVGGVDK 60
Query: 57 VVRLGRKDLNPLV 69
VV+LGRKDL P V
Sbjct: 61 VVKLGRKDLIPRV 73
>AT4G37820.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G22795.1); Has 433572 Blast hits to 177005
proteins in 4263 species: Archae - 2016; Bacteria -
67591; Metazoa - 157995; Fungi - 49745; Plants - 22011;
Viruses - 2192; Other Eukaryotes - 132022 (source: NCBI
BLink). | chr4:17785692-17787290 FORWARD LENGTH=532
Length = 532
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 6/77 (7%)
Query: 1 MFRLSPRRSQRSKGFKVKHALQICVLLGVCIWLVYQIKHTNEKKASYGESAK-----TGN 55
M R +PRR QRSKG KVKH +Q+ +LLGV IWL+YQ+KH++EKKA + ++K N
Sbjct: 1 MVR-TPRRGQRSKGIKVKHCIQLTLLLGVGIWLIYQMKHSHEKKAEFEGTSKIVVDDIDN 59
Query: 56 DVVRLGRKDLNPLVEET 72
VV LGRKDL P +EET
Sbjct: 60 TVVNLGRKDLRPRIEET 76
>AT4G33740.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37820.1);
Has 138092 Blast hits to 73110 proteins in 2951
species: Archae - 732; Bacteria - 17903; Metazoa -
48520; Fungi - 16808; Plants - 7078; Viruses - 1044;
Other Eukaryotes - 46007 (source: NCBI BLink). |
chr4:16187384-16188802 FORWARD LENGTH=472
Length = 472
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 10/70 (14%)
Query: 8 RSQR-SKGFKVKHALQICVLLGVCIWLVYQIKHTNEKKASYGES---------AKTGNDV 57
RSQR SKG K KH LQICVLLGVCIWL+YQ+K++++KK + E ++ + V
Sbjct: 7 RSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLSEVEDGV 66
Query: 58 VRLGRKDLNP 67
V+LGRKDL P
Sbjct: 67 VKLGRKDLLP 76
>AT4G33740.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37820.1); Has 138092 Blast hits to 73110
proteins in 2951 species: Archae - 732; Bacteria -
17903; Metazoa - 48520; Fungi - 16808; Plants - 7078;
Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI
BLink). | chr4:16187384-16188802 FORWARD LENGTH=472
Length = 472
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 10/70 (14%)
Query: 8 RSQR-SKGFKVKHALQICVLLGVCIWLVYQIKHTNEKKASYGES---------AKTGNDV 57
RSQR SKG K KH LQICVLLGVCIWL+YQ+K++++KK + E ++ + V
Sbjct: 7 RSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLSEVEDGV 66
Query: 58 VRLGRKDLNP 67
V+LGRKDL P
Sbjct: 67 VKLGRKDLLP 76
>AT4G33740.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37820.1); Has 138210 Blast hits to 73191
proteins in 2959 species: Archae - 732; Bacteria -
18006; Metazoa - 48521; Fungi - 16820; Plants - 7078;
Viruses - 1046; Other Eukaryotes - 46007 (source: NCBI
BLink). | chr4:16187384-16188802 FORWARD LENGTH=472
Length = 472
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 10/70 (14%)
Query: 8 RSQR-SKGFKVKHALQICVLLGVCIWLVYQIKHTNEKKASYGES---------AKTGNDV 57
RSQR SKG K KH LQICVLLGVCIWL+YQ+K++++KK + E ++ + V
Sbjct: 7 RSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLSEVEDGV 66
Query: 58 VRLGRKDLNP 67
V+LGRKDL P
Sbjct: 67 VKLGRKDLLP 76