Miyakogusa Predicted Gene

Lj4g3v0685290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0685290.2 tr|A9SF97|A9SF97_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233181,49.54,3e-17,CYTOCHROME C OXIDASE POLYPEPTIDE
VIA,Cytochrome c oxidase, subunit VIa; COX6A,Cytochrome c oxidase,
,CUFF.48307.2
         (102 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37830.1 | Symbols:  | cytochrome c oxidase-related | chr4:17...   122   4e-29
AT4G37830.2 | Symbols:  | cytochrome c oxidase-related | chr4:17...   104   1e-23

>AT4G37830.1 | Symbols:  | cytochrome c oxidase-related |
          chr4:17787672-17788762 REVERSE LENGTH=102
          Length = 102

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 1  MASALVRSXXXXXXXXXXXXXXXXXPKRNFSSSGGHDDAYETAKWEKITYLGIASCTALA 60
          MA+A+VRS                 PKRNFSSS GHDDAYE AKWEKITYLGIASCTALA
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVA-PKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALA 59

Query: 61 AYCLSKGXXXXXXXXXXXXLHIRNKEFPWGPDGLFETKH 99
           Y LSKG            +HIRNKEFPWGPDGLFE KH
Sbjct: 60 VYVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKH 98


>AT4G37830.2 | Symbols:  | cytochrome c oxidase-related |
          chr4:17787672-17788762 REVERSE LENGTH=92
          Length = 92

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 59/99 (59%), Gaps = 11/99 (11%)

Query: 1  MASALVRSXXXXXXXXXXXXXXXXXPKRNFSSSGGHDDAYETAKWEKITYLGIASCTALA 60
          MA+A+VRS                 PKRNFSSS GHDDAYE AKWEKITYLGIASCTALA
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVA-PKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALA 59

Query: 61 AYCLSKGXXXXXXXXXXXXLHIRNKEFPWGPDGLFETKH 99
           Y LSKG                  EFPWGPDGLFE KH
Sbjct: 60 VYVLSKGHHHGEDP----------PEFPWGPDGLFEVKH 88