Miyakogusa Predicted Gene

Lj4g3v0684200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0684200.1 CUFF.47914.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14060.1 | Symbols:  | GCK domain-containing protein | chr1:4...   102   1e-22
AT5G02210.1 | Symbols:  | GCK domain-containing protein | chr5:4...    69   1e-12
AT5G57640.1 | Symbols:  | GCK domain-containing protein | chr5:2...    64   3e-11
AT5G57570.1 | Symbols:  | GCK domain-containing protein | chr5:2...    62   1e-10
AT1G23201.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    47   5e-06

>AT1G14060.1 | Symbols:  | GCK domain-containing protein |
           chr1:4817354-4817893 REVERSE LENGTH=179
          Length = 179

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 38  CGFCLFMKGGGCKDSFIDWENCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPIL 96
           CGFCLFMKGGGCKDSF+ WE CV+ AEKN ED+V  C +VT+ LK+CMD H+DYY+PIL
Sbjct: 82  CGFCLFMKGGGCKDSFVAWEECVEAAEKNKEDIVTNCMEVTSMLKKCMDEHSDYYQPIL 140


>AT5G02210.1 | Symbols:  | GCK domain-containing protein |
           chr5:439253-439874 REVERSE LENGTH=161
          Length = 161

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 40  FCLFMKGGGCKDSFIDWE---NCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPIL 96
           F  FMKGGGCK+SF  W    N  +E  + N+DLV KCA +     +CMD H+DYY PIL
Sbjct: 80  FVEFMKGGGCKESFTAWNDDCNFTEEEAEKNKDLVTKCAGLFGTFSKCMDTHSDYYHPIL 139


>AT5G57640.1 | Symbols:  | GCK domain-containing protein |
           chr5:23344766-23345446 FORWARD LENGTH=226
          Length = 226

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%)

Query: 38  CGFCLFMKGGGCKDSFIDWENCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPIL 96
           C  C F+KGG CK++F + ENC  EA+KNNED V KC +     K CM  +  YYEP+L
Sbjct: 84  CPLCQFIKGGECKEAFTELENCCDEAKKNNEDHVSKCKEARLIFKTCMYDNPVYYEPLL 142


>AT5G57570.1 | Symbols:  | GCK domain-containing protein |
           chr5:23313784-23314194 REVERSE LENGTH=136
          Length = 136

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 38  CGFCLFMKGGGCKDSFIDWENCVQEAEKNNEDL-VEKCAQVTARLKQCMDAHADYYEPIL 96
           C  C F+KGG CK+SFI  E CV EAE++ E+    KC +V A+ K CM  +  YYEPIL
Sbjct: 53  CRLCRFIKGGECKESFIALEQCVDEAEESGEESDFTKCKEVRAKFKTCMYENPVYYEPIL 112


>AT1G23201.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           GCK (InterPro:IPR012891); BEST Arabidopsis thaliana
           protein match is: GCK domain-containing protein
           (TAIR:AT5G02210.1); Has 106 Blast hits to 71 proteins in
           9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:8230209-8230775 FORWARD
           LENGTH=188
          Length = 188

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 40  FCLFMKGGGCKDSFIDWENCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPIL 96
           F  FM  G CK++F+ W +  +E+ KNN+      A  T  + +C+ AH+DYY P+L
Sbjct: 105 FTKFMTRGACKEAFMAWIDFCKESRKNNKSCRHNPAMDT--MLKCVKAHSDYYHPLL 159