Miyakogusa Predicted Gene

Lj4g3v0683960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0683960.1 Non Chatacterized Hit- tr|G7I2U4|G7I2U4_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,36.21,7e-19,DUF4283,Domain of unknown function DUF4283;
zf-CCHC_4,Zinc knuckle CX2CX4HX4C,CUFF.47947.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G36228.1 | Symbols:  | nucleic acid binding;zinc ion binding ...    49   2e-06
AT2G01050.1 | Symbols:  | zinc ion binding;nucleic acid binding ...    49   2e-06

>AT5G36228.1 | Symbols:  | nucleic acid binding;zinc ion binding |
           chr5:14271691-14272776 FORWARD LENGTH=361
          Length = 361

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 1   MVGKVFTHNSFNMKAFKNTIGLIWKVRKGVKIRDIDKNLFTFRFFDPADKDMVLKASPWN 60
           ++G++    + +++     +   W +   V  R +D   F  RF    D    L+ +PW 
Sbjct: 39  LLGRILNPQTQSVERAILELPYQWGLGTQVHGRILDDRCFQVRFRSEIDLLNGLRRAPWV 98

Query: 61  FDKYLIISKDMDVEANPREINMNTALFWVFAYEVLMGSRTTQVAKFFGNLIGNFI--EWN 118
           F+++ I  +    E  P E  +     WV    + +   + +  +   + +G  +  ++N
Sbjct: 99  FNEWFIALQRW--EDFPTEDFLTFIDVWVHIRGIPLPYVSERTVEIIASTLGEVVAMDFN 156

Query: 119 EAEERKLGRFIRLRAEVNLSKPLKRGTIIAKMGRERLRVFFKYEKLGDVCYGC 171
           E    ++  FIR++  ++ ++PL+    +    RER  + F+YEKL  VC  C
Sbjct: 157 EETTSQIT-FIRVKVRMDFTEPLRFFRRVRFASRERAMIGFEYEKLQRVCTNC 208


>AT2G01050.1 | Symbols:  | zinc ion binding;nucleic acid binding |
           chr2:68337-69884 REVERSE LENGTH=515
          Length = 515

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 18/157 (11%)

Query: 23  IWKVRKGVKIRDIDKNLFTFRFFDPADKDMVLKASPWNFDKYLIISKDMDVEANPREINM 82
           +WK    + + D+ +  F  RF    +    L   PW      ++ +D     +P   ++
Sbjct: 102 LWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDI 161

Query: 83  NTALFWV----FAYEVLMGSRTTQVAKFFGNLIG---NFIEWNEAEERKLGRFIRLRAEV 135
            T   WV      Y         ++A+  G  +    N I +++      GRF R+  EV
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKVDMNTINFDK------GRFARVCIEV 215

Query: 136 NLSKPLKRGTIIAKMGRERLRVFFKYEKLGDVCYGCG 172
           NL+KPLK GT++        R F  YE L  +C  CG
Sbjct: 216 NLAKPLK-GTVLINGD----RYFVAYEGLSKICSSCG 247