Miyakogusa Predicted Gene

Lj4g3v0668270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668270.1 tr|G7JHL2|G7JHL2_MEDTR
DNA-damage-repair/toleration protein DRT111 OS=Medicago truncatula
GN=MTR_4g0,83.08,0,glycine rich nucleic binding domain,G-patch domain;
RNA recognition motif,RNA recognition motif doma,CUFF.47854.1
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing p...   300   8e-82

>AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing
           protein | chr1:10790315-10792423 FORWARD LENGTH=387
          Length = 387

 Score =  300 bits (769), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 193/399 (48%), Positives = 208/399 (52%), Gaps = 32/399 (8%)

Query: 1   MLGGLYGDLPPPSSAEEDKPTTNVWSSS---TKMAPATLRKP-AFTPPHTI--------P 48
           MLGGLYGDLPPP+  +++KP+ N  S     TKMAP TLRKP AF PP TI        P
Sbjct: 1   MLGGLYGDLPPPT--DDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKP 58

Query: 49  RSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQSTVMEEYDPARPNDXXXXXXXXX 108
                                             GV S+V+EEYDPARPND         
Sbjct: 59  IVSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKK 118

Query: 109 XXXXXXXVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXNISGEEAWRRRAAMXX 166
                  +                                    NISGEEAW+RRAAM  
Sbjct: 119 RKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSG 178

Query: 167 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKSETGGLGVGAGGQMTAAQRMMAXXXXX 226
                                         IGKSET GLGVGAGGQMTAAQRMMA     
Sbjct: 179 GGSGGKGRSSSPPGNVDGFS----------IGKSETSGLGVGAGGQMTAAQRMMAKMGWK 228

Query: 227 XXXXXXXXXXXITTPLMAKKTDRRAGVIVNASDNS------KKVKSVNFNGVPTRVLLLR 280
                      ITTPLMAKKTDRRAGVIVNAS+N       K VKSVN NG PTRVLLLR
Sbjct: 229 QGQGLGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLR 288

Query: 281 NMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKA 340
           NM                 C KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKA
Sbjct: 289 NMVGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKA 348

Query: 341 LIDLDGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGF 379
           L+DLDGR+FGGR VRATFYDE+KF KNELAP+PGEIPG+
Sbjct: 349 LVDLDGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387