Miyakogusa Predicted Gene

Lj4g3v0668220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668220.1 tr|C1ML95|C1ML95_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545) GN=CYCT PE=3
SV=1,38.46,1e-18,domain present in cyclins, TFIIB and
Retinob,Cyclin-like; CYCLIN T,NULL; CYCLIN,Cyclin C/H/T/L; no
d,CUFF.47848.1
         (432 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45190.1 | Symbols:  | Cyclin family protein | chr5:18277808-...   314   7e-86
AT5G45190.2 | Symbols:  | Cyclin family protein | chr5:18277808-...   314   8e-86
AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:10...   303   1e-82
AT4G19560.1 | Symbols: CYCT1;2 | Cyclin family protein | chr4:10...   166   3e-41
AT1G35440.1 | Symbols: CYCT1;1 | cyclin T1;1 | chr1:13035294-130...   136   3e-32
AT1G27630.1 | Symbols: CYCT1;3 | cyclin T 1;3 | chr1:9611647-961...   108   7e-24
AT2G26430.3 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | c...    83   3e-16
AT2G26430.2 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | c...    83   3e-16
AT2G26430.1 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | c...    82   5e-16
AT5G48630.1 | Symbols:  | Cyclin family protein | chr5:19721663-...    55   1e-07
AT5G48630.2 | Symbols:  | Cyclin family protein | chr5:19721663-...    54   2e-07

>AT5G45190.1 | Symbols:  | Cyclin family protein |
           chr5:18277808-18280733 REVERSE LENGTH=579
          Length = 579

 Score =  314 bits (805), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 273/442 (61%), Gaps = 36/442 (8%)

Query: 3   QEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDG 62
           +EVYEQQKELIL GE++VL+TLGFDLNV HPYKPLVEAIKKF VA+NALAQVAWNFVNDG
Sbjct: 148 KEVYEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDG 207

Query: 63  LRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLELY 122
           LRTSLCLQFKPHHIAAGAIFLAAKFL+VKLP DGEKVWWQEFDVTPRQLE+VSNQMLELY
Sbjct: 208 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267

Query: 123 EQNRIPQSQGSEMEGSAGGGTR---AAIKAPAANEEQASKQVSS-HPTPPHS-VDNDAVP 177
           EQNR+P SQGSE+E S GGG+     +  A + +E   S+Q SS   T   S  DN    
Sbjct: 268 EQNRVPASQGSEVESSVGGGSAQRPGSRNAVSTDEHVGSRQTSSVRSTHEQSNSDNHGGS 327

Query: 178 SRGTENQSN-DGSTEMGSDITDHKMDSEIRESQNSEQL----PQKDK-REAENGSRSGAE 231
           S+G  NQ+N +G  E  +   D+K + E    ++S  L      KD  REA + SR   E
Sbjct: 328 SKGVLNQNNENGGGEAANVSVDNKEEIERETKESSLHLESHPAHKDNVREAPHNSRPLVE 387

Query: 232 RIVPGSQDKMVGTKEAVEVGGRDDSCDVGRNLELREGPLNHSPKEAIKMIDKDXXXXXXX 291
              PG  +     +E  E+   D +    RN+++ +  ++ SPK+ +K++ +D       
Sbjct: 388 G--PGKDN---SEREGGELQD-DGAVHKSRNVDVGDALISQSPKD-LKLL-RDKVKAKRE 439

Query: 292 XXXXXXXXMTIKRDVXXXXXXXXXXXXXGVELAVENEKNKRERKQNWSKPDDEDHGKDHE 351
                    T K+D+              V+LAVE+EK K  + Q  S+P  E+   D  
Sbjct: 440 KAKKLLGERTRKKDLMDEDDLIERELED-VQLAVEDEKTKERKVQ--SRPKAEN--SDLM 494

Query: 352 GTTDDRHVSVKGQLKKDMDGENAEEGEMIDDASSFL--NRKRKIESPPSREPEMKKRLGS 409
           GT     + VKG++K      N EEGEM+++  S +  +RKRK+ SPP ++ E K+R   
Sbjct: 495 GTEHGEILDVKGEVK------NTEEGEMVNNNVSPMMHSRKRKMGSPPEKQSEGKRR--- 545

Query: 410 SYQNDHAEEGNGEARVGYADGD 431
            + +++ EE +  +R     GD
Sbjct: 546 -HNSENGEESHKTSRGSSHHGD 566


>AT5G45190.2 | Symbols:  | Cyclin family protein |
           chr5:18277808-18280733 REVERSE LENGTH=590
          Length = 590

 Score =  314 bits (804), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 273/442 (61%), Gaps = 36/442 (8%)

Query: 3   QEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDG 62
           +EVYEQQKELIL GE++VL+TLGFDLNV HPYKPLVEAIKKF VA+NALAQVAWNFVNDG
Sbjct: 159 KEVYEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDG 218

Query: 63  LRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLELY 122
           LRTSLCLQFKPHHIAAGAIFLAAKFL+VKLP DGEKVWWQEFDVTPRQLE+VSNQMLELY
Sbjct: 219 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 278

Query: 123 EQNRIPQSQGSEMEGSAGGGTR---AAIKAPAANEEQASKQVSS-HPTPPHS-VDNDAVP 177
           EQNR+P SQGSE+E S GGG+     +  A + +E   S+Q SS   T   S  DN    
Sbjct: 279 EQNRVPASQGSEVESSVGGGSAQRPGSRNAVSTDEHVGSRQTSSVRSTHEQSNSDNHGGS 338

Query: 178 SRGTENQSN-DGSTEMGSDITDHKMDSEIRESQNSEQL----PQKDK-REAENGSRSGAE 231
           S+G  NQ+N +G  E  +   D+K + E    ++S  L      KD  REA + SR   E
Sbjct: 339 SKGVLNQNNENGGGEAANVSVDNKEEIERETKESSLHLESHPAHKDNVREAPHNSRPLVE 398

Query: 232 RIVPGSQDKMVGTKEAVEVGGRDDSCDVGRNLELREGPLNHSPKEAIKMIDKDXXXXXXX 291
              PG  +     +E  E+   D +    RN+++ +  ++ SPK+ +K++ +D       
Sbjct: 399 G--PGKDN---SEREGGELQD-DGAVHKSRNVDVGDALISQSPKD-LKLL-RDKVKAKRE 450

Query: 292 XXXXXXXXMTIKRDVXXXXXXXXXXXXXGVELAVENEKNKRERKQNWSKPDDEDHGKDHE 351
                    T K+D+              V+LAVE+EK K  + Q  S+P  E+   D  
Sbjct: 451 KAKKLLGERTRKKDLMDEDDLIERELED-VQLAVEDEKTKERKVQ--SRPKAEN--SDLM 505

Query: 352 GTTDDRHVSVKGQLKKDMDGENAEEGEMIDDASSFL--NRKRKIESPPSREPEMKKRLGS 409
           GT     + VKG++K      N EEGEM+++  S +  +RKRK+ SPP ++ E K+R   
Sbjct: 506 GTEHGEILDVKGEVK------NTEEGEMVNNNVSPMMHSRKRKMGSPPEKQSEGKRR--- 556

Query: 410 SYQNDHAEEGNGEARVGYADGD 431
            + +++ EE +  +R     GD
Sbjct: 557 -HNSENGEESHKTSRGSSHHGD 577


>AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein |
           chr4:10673619-10676532 FORWARD LENGTH=541
          Length = 541

 Score =  303 bits (777), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 207/423 (48%), Positives = 255/423 (60%), Gaps = 59/423 (13%)

Query: 3   QEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDG 62
           +EVYEQQKELIL GE++VL+TLGFD NV HPYKPLVEAIKKF VA+NALAQVAWNFVNDG
Sbjct: 148 KEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDG 207

Query: 63  LRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLELY 122
           LRTSLCLQFKPHHIAAGAIFLAAKFL+VKLP DGEKVWWQEFDVTPRQLE+VSNQMLELY
Sbjct: 208 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267

Query: 123 EQNRIPQSQGSEMEGSAGGGTRAAIKAPAANEEQASKQVSSHPTPPHS-VDNDAVPSRGT 181
           EQNR+P SQ SE+E S GGG+   + +          + S+  T  HS  DN    ++ T
Sbjct: 268 EQNRVPASQVSEVESSVGGGSAHHVGS----------RPSARLTHEHSNSDNLGGSTKAT 317

Query: 182 ENQSND-GSTEMGSDITDHK--MDSEIRESQNSEQLPQKDKREAENGSRSGAERIVPGSQ 238
           +N+SND GS E GS IT+ K   D+E ++S ++E  P        + SRSG E   PG +
Sbjct: 318 QNRSNDNGSGEAGSVITEQKGERDTETKDSMHTESHPA-------HKSRSGVE--APG-E 367

Query: 239 DKMVGTKEAVEVGGRDDSCDVGRNLELREGPLNHSPKEAIKMI-DKDXXXXXXXXXXXXX 297
           DK+       + G      D  R +   +  ++ SPK+ IKM  DK              
Sbjct: 368 DKI------EKAGAHFPEDDKSRIVGTADVTVSQSPKD-IKMFRDK---VKAKLEAKKVQ 417

Query: 298 XXMTIKRDVXXXXXXXXXXXXXGVELAVENEKNKRERKQNWSKPDDEDHGKDHEGTTDDR 357
              T K+D+              VELAVE++K+     QN S       G +H    D  
Sbjct: 418 GEKTRKKDLVDEDDLIERELED-VELAVEDDKD----IQNKS-----SMGTEHGEILDGN 467

Query: 358 HVSVKGQLKKDMDGENAEEGEMIDDASSFL-NRKRKIESPPSREPEMKKRLGSSYQNDHA 416
           ++ V           N EEGEMIDD SS + +RKRK+ESP  ++    KR   + +N   
Sbjct: 468 NLVV-----------NTEEGEMIDDVSSTMPSRKRKMESPCEKQLGEGKRRHDNSEN--V 514

Query: 417 EEG 419
           EEG
Sbjct: 515 EEG 517


>AT4G19560.1 | Symbols: CYCT1;2 | Cyclin family protein |
           chr4:10661904-10664369 FORWARD LENGTH=460
          Length = 460

 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 123/180 (68%), Gaps = 14/180 (7%)

Query: 3   QEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSV--AKNALAQVAWNFVN 60
           +EVY+QQKEL+L+GE +VL+TL FDL + HPYKPLVEAIKK+ V  AK  LAQ AWNFVN
Sbjct: 143 KEVYDQQKELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFAWNFVN 202

Query: 61  DGLRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLE 120
           D LRT+LCLQ++PHHIAAGAI LAA+   V L     +V  QEFD+TP QLE++  Q+LE
Sbjct: 203 DCLRTTLCLQYQPHHIAAGAILLAAELPTVDLQ-SYREVLCQEFDITPCQLEDIRGQILE 261

Query: 121 LYEQNRIPQSQGSEMEGSAGGGT---------RAAIKAPAANEEQASKQVSSHPTPPHSV 171
           LYE  RIP SQ S++E S G             +  K P+++ E  S QV+   +  HSV
Sbjct: 262 LYE--RIPTSQESKVESSGGVAVVHQPISRDMASTEKCPSSDIEGGSSQVNLSQSDDHSV 319


>AT1G35440.1 | Symbols: CYCT1;1 | cyclin T1;1 |
           chr1:13035294-13036037 REVERSE LENGTH=247
          Length = 247

 Score =  136 bits (342), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 93/133 (69%), Gaps = 2/133 (1%)

Query: 2   MQEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNA--LAQVAWNFV 59
           +++V+E+ K  +L GE++VL+TL  DL ++HPYK +++ +K+    ++   L Q A+NFV
Sbjct: 114 LRDVFERLKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFV 173

Query: 60  NDGLRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQML 119
           ND LRTSLCLQF P  IA+ AI++     ++ LP DG+K WW+EFDVT RQL E+ +QML
Sbjct: 174 NDSLRTSLCLQFGPSQIASAAIYIGLSMCKMTLPCDGDKAWWREFDVTKRQLWEICDQML 233

Query: 120 ELYEQNRIPQSQG 132
           +LY Q+ +    G
Sbjct: 234 DLYVQDFVVPRHG 246


>AT1G27630.1 | Symbols: CYCT1;3 | cyclin T 1;3 |
           chr1:9611647-9613967 FORWARD LENGTH=317
          Length = 317

 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 3/120 (2%)

Query: 4   EVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDGL 63
           E Y + KE+IL GE ++L+T  F L+++ PYKPL  A+ + +   + LA  AWNFV+D +
Sbjct: 150 ECYHEFKEIILSGESLLLSTSAFHLDIELPYKPLAAALNRLNAWPD-LATAAWNFVHDWI 208

Query: 64  RTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLELYE 123
           RT+LCLQ+KPH IA   + LAA F   K  +   + WW EF VT + L+EV  +M  L E
Sbjct: 209 RTTLCLQYKPHVIATATVHLAATFQNAK--VGSRRDWWLEFGVTTKLLKEVIQEMCTLIE 266


>AT2G26430.3 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 |
           chr2:11243433-11245255 REVERSE LENGTH=361
          Length = 361

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 1   MMQEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVN 60
           M  + + + K  +   ER +L  +GF  +V+HP+K +   +         L Q AWN  N
Sbjct: 67  MYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPE-LRQEAWNLAN 125

Query: 61  DGLRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLE 120
           D LRT+LC++F+   +A G ++ AA+  R ++PL     WW+ FD     ++EV   +  
Sbjct: 126 DSLRTTLCVRFRSEVVACGVVYAAAR--RFQVPLPENPPWWKAFDADKSSIDEVCRVLAH 183

Query: 121 LYEQNRIPQSQ 131
           LY    +P++Q
Sbjct: 184 LYS---LPKAQ 191


>AT2G26430.2 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 |
           chr2:11243433-11245255 REVERSE LENGTH=361
          Length = 361

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 1   MMQEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVN 60
           M  + + + K  +   ER +L  +GF  +V+HP+K +   +         L Q AWN  N
Sbjct: 67  MYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPE-LRQEAWNLAN 125

Query: 61  DGLRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLE 120
           D LRT+LC++F+   +A G ++ AA+  R ++PL     WW+ FD     ++EV   +  
Sbjct: 126 DSLRTTLCVRFRSEVVACGVVYAAAR--RFQVPLPENPPWWKAFDADKSSIDEVCRVLAH 183

Query: 121 LYEQNRIPQSQ 131
           LY    +P++Q
Sbjct: 184 LYS---LPKAQ 191


>AT2G26430.1 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 |
           chr2:11243433-11245504 REVERSE LENGTH=416
          Length = 416

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 1   MMQEVYEQQKELILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVN 60
           M  + + + K  +   ER +L  +GF  +V+HP+K +   +         L Q AWN  N
Sbjct: 122 MYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPE-LRQEAWNLAN 180

Query: 61  DGLRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQEFDVTPRQLEEVSNQMLE 120
           D LRT+LC++F+   +A G ++ AA+  R ++PL     WW+ FD     ++EV   +  
Sbjct: 181 DSLRTTLCVRFRSEVVACGVVYAAAR--RFQVPLPENPPWWKAFDADKSSIDEVCRVLAH 238

Query: 121 LYEQNRIPQSQ 131
           LY    +P++Q
Sbjct: 239 LYS---LPKAQ 246


>AT5G48630.1 | Symbols:  | Cyclin family protein |
           chr5:19721663-19723200 REVERSE LENGTH=253
          Length = 253

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 13  ILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDGLRTSLCLQFK 72
           IL  E  VL  L F L V HPY+ L E ++   +   ++  + W  VND  R  L L   
Sbjct: 127 ILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGINDTSMTHLTWGLVNDTYRMDLILIHP 186

Query: 73  PHHIAAGAIFLAAKFLRVKLPLDGE---KVWWQEFDVTPRQLEEVSNQMLELYEQNRI 127
           P  I    I++A+        +  E   K W++E  V    ++ ++ ++L+ YE +R+
Sbjct: 187 PFLITLACIYIAS--------VHKEKDIKTWFEELSVDMNIVKNIAMEILDFYENHRL 236


>AT5G48630.2 | Symbols:  | Cyclin family protein |
           chr5:19721663-19723119 REVERSE LENGTH=256
          Length = 256

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 13  ILLGERVVLATLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDGLRTSLCLQFK 72
           IL  E  VL  L F L V HPY+ L E ++   +   ++  + W  VND  R  L L   
Sbjct: 130 ILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGINDTSMTHLTWGLVNDTYRMDLILIHP 189

Query: 73  PHHIAAGAIFLAAKFLRVKLPLDGE---KVWWQEFDVTPRQLEEVSNQMLELYEQNRI 127
           P  I    I++A+        +  E   K W++E  V    ++ ++ ++L+ YE +R+
Sbjct: 190 PFLITLACIYIAS--------VHKEKDIKTWFEELSVDMNIVKNIAMEILDFYENHRL 239