Miyakogusa Predicted Gene

Lj4g3v0655900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0655900.1 Non Chatacterized Hit- tr|I0YVT9|I0YVT9_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa subell,46,1e-17,no
description,Cytochrome c domain; Cytochrome c,Cytochrome c domain;
CYTC,Cytochrome c domain; seg,,CUFF.47821.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45040.1 | Symbols:  | Cytochrome c | chr5:18175566-18176851 ...   201   2e-52

>AT5G45040.1 | Symbols:  | Cytochrome c | chr5:18175566-18176851
           REVERSE LENGTH=175
          Length = 175

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 117/164 (71%), Gaps = 3/164 (1%)

Query: 10  STYYNRLLSVKDSVK---REEENPIPRRKAKELKFSLKXXXXXXXXXXXXXXXISGTPVS 66
           S++ + L      V    +E +NPI     K+L F LK               I   P S
Sbjct: 9   SSFTSNLFCSSQQVNGRGKELKNPISLNHNKDLDFLLKKLAPPLTAVLLAVSPICFPPES 68

Query: 67  SGQTIDIQRGATLFRKACIGCHDAGGNIIQPGSTLYTKDLQRNGVDTEEAIYRISYYGKE 126
            GQT+DIQRGATLF +ACIGCHD GGNIIQPG+TL+TKDL+RNGVDTEE IYR++Y+GK 
Sbjct: 69  LGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKG 128

Query: 127 RMPGFGKECMPRGQCTFGARLEDEDIKLLAEFVKLQANKGWPSI 170
           RMPGFG++C PRGQCTFG RL+DE+IKLLAEFVK QA++GWP++
Sbjct: 129 RMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTV 172