Miyakogusa Predicted Gene
- Lj4g3v0654500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0654500.1 tr|B9I831|B9I831_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_570913 PE=4
SV=1,35.56,5e-18,seg,NULL; Dev_Cell_Death,Development/cell death
domain; DCD,Development/cell death domain; no descri,CUFF.47803.1
(1206 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domai... 187 5e-47
AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domai... 187 5e-47
AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domai... 187 5e-47
AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domai... 113 6e-25
AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domai... 113 7e-25
AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domai... 113 7e-25
AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domai... 110 7e-24
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose ... 104 3e-22
AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domai... 103 9e-22
AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domai... 102 2e-21
AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domai... 100 8e-21
AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domai... 82 3e-15
AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domai... 72 2e-12
>AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 118/171 (69%), Gaps = 11/171 (6%)
Query: 6 FNGMHNNNARGRDPDFGAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEY 65
FNG + G +P++GAIFMSN+ T++EC RKLFGLP F++ VKAGM+LFLFE+
Sbjct: 11 FNGA----SSGGEPEYGAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEF 66
Query: 66 DKRRLHGVFKATCDGSVNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYF 125
+KR LHGVF+A DG++NI PNAF +SGKQFPAQVKF W C PL E F AI ENYF
Sbjct: 67 EKRELHGVFQACSDGAINIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYF 126
Query: 126 STYKFNFGLSEKQVSELLYLFSKRKL------EVEAPGRSLTRTEDLKSDR 170
+ KFNFGLS+ QV LL LFS +K+ E AP + L ++E+ DR
Sbjct: 127 TPTKFNFGLSKAQVQRLLKLFSMKKVERSRLRETAAP-KPLRKSENTVGDR 176
>AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 118/171 (69%), Gaps = 11/171 (6%)
Query: 6 FNGMHNNNARGRDPDFGAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEY 65
FNG + G +P++GAIFMSN+ T++EC RKLFGLP F++ VKAGM+LFLFE+
Sbjct: 11 FNGA----SSGGEPEYGAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEF 66
Query: 66 DKRRLHGVFKATCDGSVNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYF 125
+KR LHGVF+A DG++NI PNAF +SGKQFPAQVKF W C PL E F AI ENYF
Sbjct: 67 EKRELHGVFQACSDGAINIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYF 126
Query: 126 STYKFNFGLSEKQVSELLYLFSKRKL------EVEAPGRSLTRTEDLKSDR 170
+ KFNFGLS+ QV LL LFS +K+ E AP + L ++E+ DR
Sbjct: 127 TPTKFNFGLSKAQVQRLLKLFSMKKVERSRLRETAAP-KPLRKSENTVGDR 176
>AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 118/171 (69%), Gaps = 11/171 (6%)
Query: 6 FNGMHNNNARGRDPDFGAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEY 65
FNG + G +P++GAIFMSN+ T++EC RKLFGLP F++ VKAGM+LFLFE+
Sbjct: 11 FNGA----SSGGEPEYGAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEF 66
Query: 66 DKRRLHGVFKATCDGSVNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYF 125
+KR LHGVF+A DG++NI PNAF +SGKQFPAQVKF W C PL E F AI ENYF
Sbjct: 67 EKRELHGVFQACSDGAINIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYF 126
Query: 126 STYKFNFGLSEKQVSELLYLFSKRKL------EVEAPGRSLTRTEDLKSDR 170
+ KFNFGLS+ QV LL LFS +K+ E AP + L ++E+ DR
Sbjct: 127 TPTKFNFGLSKAQVQRLLKLFSMKKVERSRLRETAAP-KPLRKSENTVGDR 176
>AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863741 REVERSE LENGTH=742
Length = 742
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 99/187 (52%), Gaps = 22/187 (11%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IFM N TK +C++ ++FG+P +E +K GM LFL++++KR L+GV++AT G
Sbjct: 67 GYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGR 126
Query: 82 VNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQVSE 141
++I P AF GK +PAQV F + C PL E TF+ AI ENY + KF LS QV
Sbjct: 127 LDIEPEAF--EGK-YPAQVGFRIVMNCLPLTENTFKSAIYENYKGS-KFKQELSPHQVMS 182
Query: 142 LLYLFSKRKLEVEAPGRSLTRTE-DLKSDRDKVGKVRRSVRREMHVE---TVRNEQRSMS 197
LL LF RS T E DL R R S R + E R+ S
Sbjct: 183 LLSLF-----------RSFTSPELDLLPHRL---ASRASAPRTLSFEERFIAATHLRNAS 228
Query: 198 DIISPIS 204
++ P+S
Sbjct: 229 SVLDPLS 235
>AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 99/187 (52%), Gaps = 22/187 (11%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IFM N TK +C++ ++FG+P +E +K GM LFL++++KR L+GV++AT G
Sbjct: 63 GYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGR 122
Query: 82 VNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQVSE 141
++I P AF GK +PAQV F + C PL E TF+ AI ENY + KF LS QV
Sbjct: 123 LDIEPEAF--EGK-YPAQVGFRIVMNCLPLTENTFKSAIYENYKGS-KFKQELSPHQVMS 178
Query: 142 LLYLFSKRKLEVEAPGRSLTRTE-DLKSDRDKVGKVRRSVRREMHVE---TVRNEQRSMS 197
LL LF RS T E DL R R S R + E R+ S
Sbjct: 179 LLSLF-----------RSFTSPELDLLPHRL---ASRASAPRTLSFEERFIAATHLRNAS 224
Query: 198 DIISPIS 204
++ P+S
Sbjct: 225 SVLDPLS 231
>AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 99/187 (52%), Gaps = 22/187 (11%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IFM N TK +C++ ++FG+P +E +K GM LFL++++KR L+GV++AT G
Sbjct: 63 GYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGR 122
Query: 82 VNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQVSE 141
++I P AF GK +PAQV F + C PL E TF+ AI ENY + KF LS QV
Sbjct: 123 LDIEPEAF--EGK-YPAQVGFRIVMNCLPLTENTFKSAIYENYKGS-KFKQELSPHQVMS 178
Query: 142 LLYLFSKRKLEVEAPGRSLTRTE-DLKSDRDKVGKVRRSVRREMHVE---TVRNEQRSMS 197
LL LF RS T E DL R R S R + E R+ S
Sbjct: 179 LLSLF-----------RSFTSPELDLLPHRL---ASRASAPRTLSFEERFIAATHLRNAS 224
Query: 198 DIISPIS 204
++ P+S
Sbjct: 225 SVLDPLS 231
>AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24855908-24863729 REVERSE LENGTH=1346
Length = 1346
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 99/187 (52%), Gaps = 22/187 (11%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IFM N TK +C++ ++FG+P +E +K GM LFL++++KR L+GV++AT G
Sbjct: 63 GYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGR 122
Query: 82 VNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQVSE 141
++I P AF GK +PAQV F + C PL E TF+ AI ENY + KF LS QV
Sbjct: 123 LDIEPEAF--EGK-YPAQVGFRIVMNCLPLTENTFKSAIYENYKGS-KFKQELSPHQVMS 178
Query: 142 LLYLFSKRKLEVEAPGRSLTRTE-DLKSDRDKVGKVRRSVRREMHVE---TVRNEQRSMS 197
LL LF RS T E DL R R S R + E R+ S
Sbjct: 179 LLSLF-----------RSFTSPELDLLPHRL---ASRASAPRTLSFEERFIAATHLRNAS 224
Query: 198 DIISPIS 204
++ P+S
Sbjct: 225 SVLDPLS 231
>AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose
oxidase/kelch, beta-propeller (InterPro:IPR011043),
Kelch repeat type 1 (InterPro:IPR006652),
Development/cell death domain (InterPro:IPR013989),
Kelch related (InterPro:IPR013089), Kelch-type beta
propeller (InterPro:IPR015915); BEST Arabidopsis
thaliana protein match is: DCD (Development and Cell
Death) domain protein (TAIR:AT3G11000.1); Has 16133
Blast hits to 7053 proteins in 482 species: Archae - 40;
Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants -
1896; Viruses - 673; Other Eukaryotes - 1230 (source:
NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
Length = 656
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G +F T +EC ++LFGLPS+ +++K+ G+ LFLF Y R LHG+F+A G
Sbjct: 20 GVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQ 79
Query: 82 VNIVPNAFAASGKQ---FPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQ 138
+N P + + G + +PAQV CEPL E+ F+ AI +NY+S++ F F L Q
Sbjct: 80 LNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQ 139
Query: 139 VSELLYLFSKRKLEVEAP 156
+L L + ++ + P
Sbjct: 140 TRKLTCLLTSFAVKPKPP 157
>AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:13959685-13961989 FORWARD LENGTH=691
Length = 691
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 8/150 (5%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IFM N+ T+ +CF+ + G+ F++ +K G+ LFL++YD + L+G+F+A+ G
Sbjct: 321 GLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIFEASSAGG 380
Query: 82 VNIVPNAFAASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQVSE 141
+ + NAF S FPAQV+F C PL E F++AI ENY + KF L+ KQV +
Sbjct: 381 MKLERNAFGGS---FPAQVRFKVFSDCIPLAESQFKKAIIENYNNKNKFKTELTHKQVFK 437
Query: 142 LLYLFSKRKLEVEAPGRSLTRTEDLKSDRD 171
L LF + + +T T+ + RD
Sbjct: 438 LKKLFRPAAIPAQ-----VTHTQQIPVPRD 462
>AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3448442-3450283 FORWARD LENGTH=488
Length = 488
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IF T +EC+ + LFGLP+ + +++ + G+ LFLF Y R LHG+F+A +G
Sbjct: 13 GVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASEGK 72
Query: 82 VNIVPNAFAASGKQ---FPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQ 138
+NI A++ +G +PAQVK CEPL E+ F I ENY F F L Q
Sbjct: 73 LNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDRGQ 132
Query: 139 VSELLYLF 146
++LL LF
Sbjct: 133 TNKLLRLF 140
>AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3447847-3450283 FORWARD LENGTH=607
Length = 607
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IF T +EC+ + LFGLP+ + +++ + G+ LFLF Y R LHG+F+A +G
Sbjct: 132 GVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASEGK 191
Query: 82 VNIVPNAFAASGKQ---FPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEKQ 138
+NI A++ +G +PAQVK CEPL E+ F I ENY F F L Q
Sbjct: 192 LNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDRGQ 251
Query: 139 VSELLYLF 146
++LL LF
Sbjct: 252 TNKLLRLF 259
>AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:16815630-16816932 FORWARD LENGTH=349
Length = 349
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IF+ N+ T E KR+LFGLP + + G+ LFL+ Y +LHG+++A G
Sbjct: 218 GYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIYEAASFGG 277
Query: 82 VNIVPNAF----AASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEK 137
NI NAF +FPAQV+ + C PL E +FR + +++ KF LS
Sbjct: 278 TNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDSFRPIL--HHYDGPKFRLELSVP 335
Query: 138 QVSELLYLFS 147
+V LL +F+
Sbjct: 336 EVLSLLDIFA 345
>AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:9990020-9991407 FORWARD LENGTH=296
Length = 296
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 GAIFMSNSGTKRECFKRKLFGLPSSEIKFLEKVKAGMILFLFEYDKRRLHGVFKATCDGS 81
G IF+ N+ T +E KR LFGLP + + G+ LFL+ Y +LHG+F+AT G
Sbjct: 164 GYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEATTFGG 223
Query: 82 VNIVPNAF----AASGKQFPAQVKFVPIWFCEPLHEKTFRRAIKENYFSTYKFNFGLSEK 137
NI A+ +FPAQV+ C+ L E +FR + +++ KF LS
Sbjct: 224 TNIDATAWEDKKCKGESRFPAQVRIRVRKICKALEEDSFRPVL--HHYDGPKFRLELSVP 281
Query: 138 QVSELLYL 145
+ +LL L
Sbjct: 282 ETLDLLDL 289