Miyakogusa Predicted Gene

Lj4g3v0654480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0654480.1 Non Chatacterized Hit- tr|I1KM83|I1KM83_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9843
PE=,87.5,0,TIGR00149_YbjQ: secondary thiamine-phosphate
synth,Uncharacterised protein family UPF0047; UPF0047,U,CUFF.47800.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21065.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   271   1e-73

>AT1G21065.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s:
           Uncharacterised protein family UPF0047
           (InterPro:IPR001602); Has 3800 Blast hits to 3784
           proteins in 1137 species: Archae - 215; Bacteria - 2154;
           Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0;
           Other Eukaryotes - 1191 (source: NCBI BLink). |
           chr1:7374210-7375644 FORWARD LENGTH=217
          Length = 217

 Score =  271 bits (694), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 136/151 (90%)

Query: 25  KESMAESTVPKWAQKTVTLPPLRRGCHLVTSKIAKEIEQDLSGFKCGLAHLFLQHTSASL 84
           + SMA S+  KWAQKT+TLPPLRRGCHL+T KI KEI +DLS F CGLAH+FLQHTSASL
Sbjct: 67  RASMASSSGAKWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASL 126

Query: 85  TINENYDSDVRHDTETFLNRIVPEGPSAPWKHTIEGPDDMPAHIKSSMFGCTLTIPITNG 144
           TINENYD DV+ DTETFLNRIVPEG SAPW+HT+EGPDDMPAHIKSSMFGC LTIPIT G
Sbjct: 127 TINENYDPDVQADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKG 186

Query: 145 KLNMGTWQGIWLCEHRDDPTSRRVVVTLNGI 175
           KL+MGTWQGIWLCEHRD PT+RRVVVTLNGI
Sbjct: 187 KLSMGTWQGIWLCEHRDAPTARRVVVTLNGI 217