Miyakogusa Predicted Gene
- Lj4g3v0654460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0654460.1 Non Chatacterized Hit- tr|I3S7G1|I3S7G1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,GCV_H,Glycine cleavage H-protein; Single hybrid
motif,Single hybrid motif; GcvH,Glycine cleavage H-p,CUFF.47797.1
(155 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35120.1 | Symbols: | Single hybrid motif superfamily protei... 256 6e-69
AT1G32470.1 | Symbols: | Single hybrid motif superfamily protei... 186 4e-48
AT2G35370.1 | Symbols: GDCH | glycine decarboxylase complex H | ... 185 1e-47
>AT2G35120.1 | Symbols: | Single hybrid motif superfamily protein |
chr2:14805913-14807274 REVERSE LENGTH=156
Length = 156
Score = 256 bits (653), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 134/156 (85%), Gaps = 1/156 (0%)
Query: 1 MACRQLWASRAASYLRISVFNRAFSSVV-KDLKYADSHEWVKVDGNSATVGITDHAQDHL 59
MACR WASR AS+LRISV R FSSVV KDLKYADSHEWVK+DGN AT GITDHAQDHL
Sbjct: 1 MACRLFWASRVASHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHL 60
Query: 60 GDVVYVELPEVGTEVTQGGGFGAVESVKATSDINSPVSGKVVEVNEELNSSPAKVNSSPY 119
GDVVYVELP+VG V+QG FGAVESVKATSDINSPVSGKVVEVNEEL SP VNSSPY
Sbjct: 61 GDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPY 120
Query: 120 EDGWIIKVELSDSSELSNLMDSEQYSKFCEEEDSKH 155
E GWIIKVELSD+ E LMDS++YSKFCEEED+KH
Sbjct: 121 EQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156
>AT1G32470.1 | Symbols: | Single hybrid motif superfamily protein |
chr1:11739479-11740246 REVERSE LENGTH=166
Length = 166
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 121/167 (72%), Gaps = 13/167 (7%)
Query: 1 MACRQLWASRAAS------------YLRISVFNRAFSSVVKDLKYADSHEWVKVDGNSAT 48
MA R +WAS A+ L +R FSSV++ LKYA+SHEWVK +G+ AT
Sbjct: 1 MALR-MWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVAT 59
Query: 49 VGITDHAQDHLGDVVYVELPEVGTEVTQGGGFGAVESVKATSDINSPVSGKVVEVNEELN 108
+GITDHAQDHLG+VV+VELPE + V++ FGAVESVKATS+I SP+SG+V+EVN +L
Sbjct: 60 IGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLT 119
Query: 109 SSPAKVNSSPYEDGWIIKVELSDSSELSNLMDSEQYSKFCEEEDSKH 155
SP +NSSPYEDGW+IKV+ S +EL LM ++Y+KFCEEED+ H
Sbjct: 120 ESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166
>AT2G35370.1 | Symbols: GDCH | glycine decarboxylase complex H |
chr2:14891239-14892050 FORWARD LENGTH=165
Length = 165
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 126/166 (75%), Gaps = 12/166 (7%)
Query: 1 MACRQLWASRAASYLRISV-----------FNRAFSSVVKDLKYADSHEWVKVDGNSATV 49
MA R +WAS A+ L++S F+R FS+V++ LKYA+SHEWVK +G+ AT+
Sbjct: 1 MALR-MWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATI 59
Query: 50 GITDHAQDHLGDVVYVELPEVGTEVTQGGGFGAVESVKATSDINSPVSGKVVEVNEELNS 109
GIT HAQDHLG+VV+VELPE T V++ FGAVESVKATS+I SP+SG+++EVN++L
Sbjct: 60 GITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTE 119
Query: 110 SPAKVNSSPYEDGWIIKVELSDSSELSNLMDSEQYSKFCEEEDSKH 155
SP +NSSPYEDGW+IKV+ S +EL +LM ++Y+KFCEEED+ H
Sbjct: 120 SPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165