Miyakogusa Predicted Gene

Lj4g3v0633410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0633410.1 Non Chatacterized Hit- tr|A3AFR6|A3AFR6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,80.95,0.07,no
description,Homeodomain-like; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; ,CUFF.47721.1
         (117 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01430.1 | Symbols: ATHB17, ATHB-17, HB17 | homeobox-leucine ...   115   5e-27
AT1G70920.1 | Symbols: ATHB18, HB18 | homeobox-leucine zipper pr...   102   5e-23
AT5G06710.1 | Symbols: HAT14 | homeobox from Arabidopsis thalian...    99   5e-22
AT4G37790.1 | Symbols: HAT22 | Homeobox-leucine zipper protein f...    92   1e-19
AT2G44910.1 | Symbols: ATHB4, ATHB-4, HB4 | homeobox-leucine zip...    91   1e-19
AT3G60390.1 | Symbols: HAT3 | homeobox-leucine zipper protein 3 ...    86   7e-18
AT2G22800.1 | Symbols: HAT9 | Homeobox-leucine zipper protein fa...    85   1e-17
AT4G16780.1 | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox prot...    85   1e-17
AT4G17460.1 | Symbols: HAT1 | Homeobox-leucine zipper protein 4 ...    85   1e-17
AT5G47370.1 | Symbols: HAT2 | Homeobox-leucine zipper protein 4 ...    84   2e-17
AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr1...    58   1e-09
AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein ...    53   4e-08
AT5G15150.1 | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 | ...    51   2e-07
AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3...    50   3e-07
AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein ...    49   7e-07
AT3G01470.1 | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | hom...    49   7e-07
AT1G27045.1 | Symbols:  | Homeobox-leucine zipper protein family...    49   8e-07
AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:95...    48   1e-06
AT5G65310.1 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein 5 |...    48   1e-06
AT5G65310.2 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein 5 |...    48   1e-06
AT2G46680.2 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:1...    47   3e-06
AT2G46680.1 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:1...    47   4e-06

>AT2G01430.1 | Symbols: ATHB17, ATHB-17, HB17 | homeobox-leucine
           zipper protein 17 | chr2:187798-190369 REVERSE
           LENGTH=275
          Length = 275

 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 63/87 (72%), Gaps = 8/87 (9%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
            L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGSLTE+N           AMKVGP
Sbjct: 172 HLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGP 231

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVT 88
            TV +        AS+L+MCP CERVT
Sbjct: 232 TTVNS--------ASSLTMCPRCERVT 250


>AT1G70920.1 | Symbols: ATHB18, HB18 | homeobox-leucine zipper
           protein 18 | chr1:26736126-26738419 FORWARD LENGTH=206
          Length = 206

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 57/102 (55%), Gaps = 13/102 (12%)

Query: 3   LKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGPP 62
           LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFGSL EQN           A+     
Sbjct: 103 LKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRAL----- 157

Query: 63  TVIAPHTSKPLPASTLSMCPCCERVTTTVATVDKANTAAATL 104
                   KP   S L+MCP CERVT  V     A    A L
Sbjct: 158 --------KPSSTSALTMCPRCERVTDAVDNDSNAVQEGAVL 191


>AT5G06710.1 | Symbols: HAT14 | homeobox from Arabidopsis thaliana |
           chr5:2068305-2070284 REVERSE LENGTH=336
          Length = 336

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 60/91 (65%), Gaps = 6/91 (6%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   SLTE+N            +K   
Sbjct: 223 QLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTST 282

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVTTTVA 92
           P  +       LPA+TL+MCP CERV T+ A
Sbjct: 283 PFYMQ------LPATTLTMCPSCERVATSAA 307


>AT4G37790.1 | Symbols: HAT22 | Homeobox-leucine zipper protein
           family | chr4:17768241-17769272 FORWARD LENGTH=278
          Length = 278

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 6/94 (6%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+   +LT++N           A+K+  
Sbjct: 159 QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQ 218

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVTTTVATVD 95
           P  +       +PA+TL+MCP CER+       D
Sbjct: 219 PFYMH------MPAATLTMCPSCERLGGGGVGGD 246


>AT2G44910.1 | Symbols: ATHB4, ATHB-4, HB4 | homeobox-leucine zipper
           protein 4 | chr2:18517887-18519525 REVERSE LENGTH=318
          Length = 318

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 5/89 (5%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           QL L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+N           A+K+ P
Sbjct: 196 QLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSP 255

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVTTT 90
              +  H +   P +TL+MCP CERV+++
Sbjct: 256 HLYM--HMT---PPTTLTMCPSCERVSSS 279


>AT3G60390.1 | Symbols: HAT3 | homeobox-leucine zipper protein 3 |
           chr3:22320788-22322370 REVERSE LENGTH=315
          Length = 315

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 5/85 (5%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           QL L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR   +LT++N           A+K+ P
Sbjct: 195 QLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSP 254

Query: 62  PTVIAPHTSKPLPASTLSMCPCCER 86
              +  H     P +TL+MCP CER
Sbjct: 255 HLYM--HMK---PPTTLTMCPSCER 274


>AT2G22800.1 | Symbols: HAT9 | Homeobox-leucine zipper protein
           family | chr2:9704949-9706048 REVERSE LENGTH=274
          Length = 274

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 6/86 (6%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+   +L ++N            +K+  
Sbjct: 146 QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQ 205

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERV 87
           P  +       +PASTL+ CP CER+
Sbjct: 206 PFYMH------MPASTLTKCPSCERI 225


>AT4G16780.1 | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox protein
           2 | chr4:9449291-9450604 FORWARD LENGTH=284
          Length = 284

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 5/87 (5%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           QL L+ RQVEVWFQNRRAR+KLKQTE++CE+L+R   +LTE+N           A+K+ P
Sbjct: 162 QLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSP 221

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVT 88
              +  H S   P +TL+MCP CE V+
Sbjct: 222 QFYM--HMS---PPTTLTMCPSCEHVS 243


>AT4G17460.1 | Symbols: HAT1 | Homeobox-leucine zipper protein 4
           (HB-4) / HD-ZIP protein | chr4:9739862-9740983 FORWARD
           LENGTH=282
          Length = 282

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           +L L  RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N           A+K+ P
Sbjct: 168 KLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSP 227

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVTTTVATVDKANTAAATLSP 106
                    +  P +TL MCP CERV    ++    N  + +LSP
Sbjct: 228 RLY-----GQMSPPTTLLMCPSCERVAGPSSS--NHNQRSVSLSP 265


>AT5G47370.1 | Symbols: HAT2 | Homeobox-leucine zipper protein 4
           (HB-4) / HD-ZIP protein | chr5:19216482-19217647 REVERSE
           LENGTH=283
          Length = 283

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGP 61
           +L L  RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N            +K+ P
Sbjct: 163 KLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSP 222

Query: 62  PTVIAPHTSKPLPASTLSMCPCCERVTTTVATVDKANTAAATLSPKV 108
                    +  P +TL MCP CERV    ++    N    +++P V
Sbjct: 223 QFY-----GQMTPPTTLIMCPSCERVGGPSSSNHHHNHRPVSINPWV 264


>AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 |
           chr1:9356126-9357239 FORWARD LENGTH=255
          Length = 255

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 3   LKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNXXXXXXXXXXXAMKVGPP 62
           L LQPRQ+ +WFQNRRARSK KQ E + + LKR F SL ++N           A      
Sbjct: 105 LGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQA------ 158

Query: 63  TVIAPHTSKPLPASTLSM---CPCCERVTTTVATV 94
            V+A  + +P+ +  L+      C +R       +
Sbjct: 159 QVMALKSREPIESINLNKETEGSCSDRSENISGDI 193


>AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein
           family | chr1:26259166-26260465 FORWARD LENGTH=294
          Length = 294

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   LKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 44
           L LQPRQ+ +WFQNRRAR K KQ E + + LKR F +L  +N
Sbjct: 119 LGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAEN 160


>AT5G15150.1 | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 |
           chr5:4913951-4915609 REVERSE LENGTH=314
          Length = 314

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 28/42 (66%)

Query: 3   LKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 44
           L LQPRQ+ +WFQNRRAR K KQ E + + LK+ F  L   N
Sbjct: 149 LGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDN 190


>AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 |
           chr3:73599-75295 FORWARD LENGTH=286
          Length = 286

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 3   LKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 44
           L +QPRQ+ +WFQNRRAR K +Q E + + LK+ F SL   N
Sbjct: 121 LGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDN 162


>AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein 16
           | chr4:18571682-18572774 REVERSE LENGTH=294
          Length = 294

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 27/39 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSL 40
           +L LQPRQV VWFQNRRAR K KQ E +   LK  + SL
Sbjct: 92  ELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSL 130


>AT3G01470.1 | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 |
           homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272
          Length = 272

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSL 40
           +L LQPRQV VWFQNRRAR K KQ E + + LK  +  L
Sbjct: 101 KLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQL 139


>AT1G27045.1 | Symbols:  | Homeobox-leucine zipper protein family |
           chr1:9391893-9392887 FORWARD LENGTH=227
          Length = 227

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSL 40
           +L LQP QV VWFQNRRAR K KQ E +C+ LK  +  L
Sbjct: 101 KLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKL 139


>AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 |
           chr2:9526470-9527612 REVERSE LENGTH=311
          Length = 311

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 27/39 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSL 40
           +L LQPRQV VWFQNRRAR K KQ E +   LK  + SL
Sbjct: 95  ELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSL 133


>AT5G65310.1 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein 5 |
           chr5:26102457-26104217 REVERSE LENGTH=312
          Length = 312

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSL 40
           +L LQPRQV +WFQNRRAR K KQ E +   LK  F +L
Sbjct: 105 ELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDAL 143


>AT5G65310.2 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein 5 |
           chr5:26102457-26103854 REVERSE LENGTH=294
          Length = 294

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSL 40
           +L LQPRQV +WFQNRRAR K KQ E +   LK  F +L
Sbjct: 87  ELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDAL 125


>AT2G46680.2 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 |
           chr2:19165777-19166773 REVERSE LENGTH=256
          Length = 256

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQ 43
           +L LQPRQV +WFQN+RAR K KQ E E   L++ + +L  Q
Sbjct: 65  ELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQ 106


>AT2G46680.1 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 |
           chr2:19165777-19166773 REVERSE LENGTH=258
          Length = 258

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 2   QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQ 43
           +L LQPRQV +WFQN+RAR K KQ E E   L++ + +L  Q
Sbjct: 65  ELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQ 106