Miyakogusa Predicted Gene

Lj4g3v0631000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0631000.1 Non Chatacterized Hit- tr|B9SJ55|B9SJ55_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.05,0.00000000000002,Linker_histone,Histone H1/H5; "Winged helix"
DNA-binding domain,NULL; no description,Winged helix-tu,CUFF.47727.1
         (357 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08780.1 | Symbols:  | winged-helix DNA-binding transcription...    67   1e-11

>AT5G08780.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:2856782-2858810 FORWARD
           LENGTH=457
          Length = 457

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 1   MIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVREI 52
           MI  AI DLN+  G++E+AISEF++ KY++LP+AH  LL +HL KL E REI
Sbjct: 61  MIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREI 112