Miyakogusa Predicted Gene

Lj4g3v0630990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0630990.1 Non Chatacterized Hit- tr|B9SJ55|B9SJ55_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,34.51,0.000000000000002,Domain in histone families,Histone H1/H5;
Linker_histone,Histone H1/H5; "Winged helix" DNA-binding
d,CUFF.47726.1
         (433 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08780.1 | Symbols:  | winged-helix DNA-binding transcription...    80   2e-15
AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcrip...    59   7e-09
AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:1797...    53   5e-07
AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription...    49   8e-06
AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription...    49   9e-06

>AT5G08780.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:2856782-2858810 FORWARD
           LENGTH=457
          Length = 457

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 67  HTPAHPPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVR 126
            TP HP Y+ MI  AI DLN+  G++E+AISEF++ KY++LP+AH  LL +HL KL E R
Sbjct: 51  RTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKR 110

Query: 127 EI 128
           EI
Sbjct: 111 EI 112


>AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding
           transcription factor family protein |
           chr3:6169384-6171558 REVERSE LENGTH=480
          Length = 480

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 35/52 (67%)

Query: 71  HPPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKL 122
           HPPY+ MI  AI  LNE DGS++ AIS ++ + Y  L  AHA LL +HL+ L
Sbjct: 65  HPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTL 116


>AT1G48620.1 | Symbols: HON5 | high mobility group A5 |
           chr1:17974148-17976301 REVERSE LENGTH=479
          Length = 479

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 74  YALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKL 122
           Y+ MI  AI  LNE DGS+++AIS ++ + Y  +P AH  LL +HL+ L
Sbjct: 78  YSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTL 126


>AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=202
          Length = 202

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 68  TPAHPPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLC 123
           T +HP Y  MI+ AI  L ER GS++ AI +F+ +K++ LP    +LL  +L++L 
Sbjct: 59  TSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLV 114


>AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=273
          Length = 273

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 68  TPAHPPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLC 123
           T +HP Y  MI+ AI  L ER GS++ AI +F+ +K++ LP    +LL  +L++L 
Sbjct: 59  TSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLV 114