Miyakogusa Predicted Gene

Lj4g3v0599890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0599890.1 tr|C1FI28|C1FI28_MICSR Transcription initiation
factor IIE, alpha subunit OS=Micromonas sp. (strain
,33.5,4e-19,TFIIE_alpha,TFIIEalpha/SarR/Rpc3 HTH domain;
coiled-coil,NULL; Zinc beta-ribbon,NULL; HTH_TFE_IIE,Tr,CUFF.47640.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   306   8e-84
AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   259   1e-69
AT4G20810.1 | Symbols:  | transcription initiation factor IIE (T...   201   2e-52

>AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr1:803635-806758 FORWARD LENGTH=479
          Length = 479

 Score =  306 bits (783), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 172/205 (83%), Gaps = 5/205 (2%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGGSDNRGIAVVVLYALTRRQWVREEDLAKD 60
           +++P+ KLV+L ARAFYDD T+K DNQ KS  SDNRGIA VVL AL RRQWVREEDLAKD
Sbjct: 12  VLQPFVKLVRLVARAFYDDYTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDLAKD 71

Query: 61  LKLHTKQLRRTLRFFEEEKIITRDHRRETAKGAKIYSAAVAATADSQQTGKEGEEKVKLH 120
           L+LH KQLR+ +R FEEEK+I RDHR+ETAKGAK+YSAAVAAT D +      E+KVKLH
Sbjct: 72  LQLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMYSAAVAATTDGR-----AEDKVKLH 126

Query: 121 THSYCCLDYAQIYDVTRYRLHRMKHKLKDELDNKNTLQEYICPNCAKRYNALDALRLISF 180
           THSYCCLDYAQI DV R+RLHRMK +LKDEL++KNT+QEY CPNC ++YNALDALRLIS 
Sbjct: 127 THSYCCLDYAQICDVVRFRLHRMKKRLKDELEDKNTVQEYGCPNCQRKYNALDALRLISM 186

Query: 181 EDEDFHCESCNGKLEVESDKIAAQE 205
            D+ FHCE+CNG+L VE +K+ ++E
Sbjct: 187 VDDSFHCENCNGELVVECNKLTSEE 211


>AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr4:10985011-10987748 FORWARD LENGTH=475
          Length = 475

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 160/205 (78%), Gaps = 6/205 (2%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGGSDNRGIAVVVLYALTRRQWVREEDLAKD 60
           ++EP+ KLV+L  R FYD+ T + DNQ KS   + +G AV+VL ALTRRQWVREEDLAK+
Sbjct: 13  VLEPFVKLVRLLVRIFYDNYTPESDNQQKSV-KNVKGSAVIVLDALTRRQWVREEDLAKE 71

Query: 61  LKLHTKQLRRTLRFFEEEKIITRDHRRETAKGAKIYSAAVAATADSQQTGKEGEEKVKLH 120
           +K + K+LR+ +R FEE+K + R HR+ETAK AK+YS AV  T D +      E+ VK H
Sbjct: 72  VKRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDGR-----AEDNVKFH 126

Query: 121 THSYCCLDYAQIYDVTRYRLHRMKHKLKDELDNKNTLQEYICPNCAKRYNALDALRLISF 180
           THSYCCLDYAQIYD+ RY+LHR+K K KDEL+++NT+QEY CPNC ++YNALDALRLIS 
Sbjct: 127 THSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRKYNALDALRLISM 186

Query: 181 EDEDFHCESCNGKLEVESDKIAAQE 205
           ED+ FHCE+CNG+L +E +K+ ++E
Sbjct: 187 EDDSFHCENCNGELVMECNKLISEE 211


>AT4G20810.1 | Symbols:  | transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein |
           chr4:11141427-11143597 REVERSE LENGTH=416
          Length = 416

 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 135/198 (68%), Gaps = 29/198 (14%)

Query: 8   LVKLAARAFYDDLTSKGDNQPKSGGSDNRGIAVVVLYALTRRQWVREEDLAKDLKLHTKQ 67
           +VKL A+ FYD+ T K +NQ KS  + + GIAV+VL ALTRRQWVREEDLAK+LKL+TKQ
Sbjct: 1   MVKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQ 60

Query: 68  LRRTLRFFEEEKIITRDHRRETAKGAKIYSAAVAATADSQQTGKEGEEKVKLHTHSYCCL 127
           LR  LR+FEE++ I R HR+E +               S  T   GE+KVK+H +SYCCL
Sbjct: 61  LRTILRYFEEQQFIMRVHRKEKS---------------SATTNGRGEDKVKVHMYSYCCL 105

Query: 128 DYAQIYDVTRYRLHRMKHKLKDELDNKNTLQEYICPNCAKRYNALDALRLISFEDEDFHC 187
           DY+QIYDV RY+LHRMK + KD L++K+ +QEY CPNC ++           F    FHC
Sbjct: 106 DYSQIYDVIRYKLHRMKKEFKDVLEDKDNVQEYGCPNCKRKI----------F----FHC 151

Query: 188 ESCNGKLEVESDKIAAQE 205
           E+CNG+L +E +K+ ++E
Sbjct: 152 ENCNGELVMECNKLTSEE 169