Miyakogusa Predicted Gene
- Lj4g3v0575400.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0575400.2 Non Chatacterized Hit- tr|A9NWA0|A9NWA0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,24.44,0.0000006,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait;
RNA-binding,CUFF.47618.2
(321 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 433 e-122
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 414 e-116
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 376 e-105
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 372 e-103
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 332 3e-91
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 325 4e-89
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 324 5e-89
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 319 2e-87
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 313 7e-86
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 292 2e-79
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 245 3e-65
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 141 6e-34
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 137 1e-32
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 136 2e-32
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 132 4e-31
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 130 2e-30
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 104 8e-23
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 95 7e-20
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 95 8e-20
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 93 3e-19
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 89 5e-18
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 89 5e-18
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 83 3e-16
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 83 3e-16
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 83 3e-16
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 80 3e-15
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 79 6e-15
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 78 9e-15
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 7e-14
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 74 1e-13
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 73 3e-13
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 8e-13
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 7e-12
AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 67 1e-11
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 6e-11
AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 65 9e-11
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 7e-10
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 7e-10
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 62 7e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 61 8e-10
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 60 2e-09
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 60 2e-09
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 60 2e-09
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 60 3e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 59 4e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 59 4e-09
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 57 1e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 56 3e-08
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 7e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 2e-07
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 2e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 54 2e-07
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 2e-07
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 3e-07
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 4e-07
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 6e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 6e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 6e-07
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 51 1e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 51 1e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 1e-06
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 2e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 50 2e-06
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 49 3e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 49 4e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 49 5e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 9e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 9e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 9e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 9e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 9e-06
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/286 (72%), Positives = 238/286 (83%), Gaps = 2/286 (0%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDE Y+H+CF+HTGEV S KVIRNK T QSEGYGFVEF SRA AE+VLQN++G++MPN+D
Sbjct: 119 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSD 178
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FR+NWASFS GE+R+ DLS+FVGDL+ DVTD +L ETF R+ S+K AKVVIDS
Sbjct: 179 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 238
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
NTGRSKGYGFVRFGDENER+RA+TEMNG +CSNR MRVG+ATPK+ AV+
Sbjct: 239 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA-NQQQHSSQAVI 297
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG 240
LAGGH SNG++ GSQSDG+S N TIFVGG+D D+ DEDLRQPF QFG+VVSVKIPVGKG
Sbjct: 298 LAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG 357
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 286
CGFVQFADRK+AE+AI +LNGTVIGK TVRLSWGRSP NK WR DS
Sbjct: 358 CGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDS 402
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/314 (66%), Positives = 238/314 (75%), Gaps = 11/314 (3%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDE Y+H CF+HT EV S KVIRNKQT QSEGYGFVEF SR+ AE+ LQ+F+G MPN +
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAE 189
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FRLNWASFS GE+R+ DLSIFVGDLA DV+DA+L ETF R+ S+KGAKVVIDS
Sbjct: 190 QPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDS 249
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK--TYGXXXXXXXXXA 178
NTGRSKGYGFVRFGDENER+RAMTEMNG FCS+R MRVG+ATPK+ YG A
Sbjct: 250 NTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG---QQNGSQA 306
Query: 179 VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG 238
+ LAGGH N GS SDG+SNN+TIFVGGLD+D+++EDL QPF FG+VVSVKIPVG
Sbjct: 307 LTLAGGHGGN-----GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG 361
Query: 239 KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDSNXXXXXXXXXXX 298
KGCGFVQFA+R++AEEAI LNGTVIGK TVRLSWGRSP NK WRSDS
Sbjct: 362 KGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQ 420
Query: 299 XXXXARQNQDMGMH 312
NQD M+
Sbjct: 421 GYNNGYANQDSNMY 434
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/285 (65%), Positives = 220/285 (77%), Gaps = 15/285 (5%)
Query: 1 MDENYVHNCF--AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPN 58
MDE Y+++ F A E+VS KVIRNK G SEGYGFVEF S A+KVLQ FNG MPN
Sbjct: 114 MDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPN 173
Query: 59 TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
TDQ FRLNWASFS GE+R E DLSIFVGDLA DV+DA+L ETF ++ S+K AKVV+
Sbjct: 174 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVL 233
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXA 178
D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+KT G
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ------ 287
Query: 179 VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG 238
GG+ +GA ++S+GD+ NTTIFVGGLDS ++DEDL+QPF +FG++VSVKIPVG
Sbjct: 288 ----GGYMPSGAF---TRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG 340
Query: 239 KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 283
KGCGFVQF +R NAEEA+ LNGTVIGKQTVRLSWGR+P NK R
Sbjct: 341 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/285 (64%), Positives = 218/285 (76%), Gaps = 15/285 (5%)
Query: 1 MDENYVHNCFAH--TGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPN 58
MDE Y+++ FA E+VS KVIRNK G SEGYGFVEF S A+KVL+ FNGT MPN
Sbjct: 112 MDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN 171
Query: 59 TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
TDQ FRLNWASFS GE+R E DLSIFVGDL+ DV+D +L ETF ++ S+K AKVV+
Sbjct: 172 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL 231
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXA 178
D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+KT G
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ------- 284
Query: 179 VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG 238
GG+ NG + ++ +GD NTTIFVGGLDS ++DEDL+QPF +FG++VSVKIPVG
Sbjct: 285 ---QGGYMPNGTL---TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG 338
Query: 239 KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 283
KGCGFVQF +R NAEEA+ LNGTVIGKQTVRLSWGR+P NK R
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 332 bits (850), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/282 (58%), Positives = 204/282 (72%), Gaps = 17/282 (6%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPN-T 59
MDEN+++ CFAHTGE+VSAKVIRNKQTGQ EGYGF+EF S A AE+VLQ FN +P+
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 60 DQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
DQ FRLNWAS S+G++R + + D +IFVGDLA DVTD +L ETF + + S+KGAKVVID
Sbjct: 133 DQLFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVID 190
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAV 179
TGR+KGYGFVRF DE+E+ RAMTEMNGV CS RPMR+G A KK
Sbjct: 191 RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKG------------- 237
Query: 180 VLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK 239
+ G S + A G +D D NNTT+FVGGLD+ ++D+ L+ F Q+G++V VKIP GK
Sbjct: 238 -VTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Query: 240 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKH 281
CGFVQF+++ AEEA+ LNG +G TVRLSWGRSP NK
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 199/281 (70%), Gaps = 22/281 (7%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY+ + FA +GE SAKVIRNK TGQSEGYGF+EF S + AE+VLQ +NG MP+T+
Sbjct: 71 MDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTE 130
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FRLNWA AGE+R + D +IFVGDLA +VTD ML +TF + + S+KGAKVV+D
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
TGRSKGYGFVRF DENE+ RAMTEMNG +CS RPMR+G A K
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL------------- 237
Query: 181 LAGGHPSNGAVAQGSQ----SDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP 236
P A+ Q +Q D D NNTTIFVGGLD++++D++L+ F QFG+++ VKIP
Sbjct: 238 -----PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Query: 237 VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 277
GK CGFVQ+A++ +AE A+ LNGT +G Q++RLSWGRSP
Sbjct: 293 PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP 333
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 324 bits (830), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 200/285 (70%), Gaps = 16/285 (5%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY+ N F TGE +AKVIRNKQ G SEGYGF+EF + ATAE+ LQ +NG MP+++
Sbjct: 91 MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSE 150
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
QAFRLNWA AGERR +A + ++FVGDLA DVTD ML ETF + +SS+KGAKVV D
Sbjct: 151 QAFRLNWAQLGAGERR-QAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDR 209
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
TGRSKGYGFVRF DE+E+ RAMTEMNG +CS+RPMR G A KK
Sbjct: 210 TTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTM----------- 258
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG 240
P++ QG+ + D NTTIFVG +D ++++DL+ F QFG++V VKIP GK
Sbjct: 259 ----QPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR 314
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 285
CGFVQ+A+R AE+A+ LNGT +G Q++RLSWGRSP NK + D
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 319 bits (817), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 198/289 (68%), Gaps = 7/289 (2%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+DENY+ +CF+ TGE+VS KVIRNK TGQ EGYGF+EF S A AE+ LQ +NGT MP T+
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTE 94
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
FRLNWASF +G++ A D SIFVGDLA DVTD +LQETF +SS++GAKVV D
Sbjct: 95 LTFRLNWASFGSGQKVD--AGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDP 152
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
+TGRSKGYGFV+F +E+ER RAM EMNG++CS RPMR+ ATPKK G V
Sbjct: 153 STGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVP 212
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG 240
A P VA + D TTI V LD ++++E+L++ F Q G+V+ VKIP KG
Sbjct: 213 SAVAAPVQAYVA---PPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKG 269
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHW--RSDSN 287
G+VQF R +AEEA+ + G VIG+Q VR+SW ++PG W ++D N
Sbjct: 270 YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADPN 318
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 198/293 (67%), Gaps = 11/293 (3%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+DENY+ +CF+ TGE+VS KVIRNK TGQ EGYGF+EF S A AE+ LQ +NGT MP T+
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTE 94
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
FRLNWASF +G++ A D SIFVGDLA DVTD +LQETF +SS++GAKVV D
Sbjct: 95 LTFRLNWASFGSGQKVD--AGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDP 152
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXA-- 178
+TGRSKGYGFV+F +E+ER RAM EMNG++CS RPMR+ ATPKK G
Sbjct: 153 STGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYP 212
Query: 179 --VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP 236
V A P VA + D TTI V LD ++++E+L++ F Q G+V+ VKIP
Sbjct: 213 VTVPSAVAAPVQAYVA---PPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 269
Query: 237 VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHW--RSDSN 287
KG G+VQF R +AEEA+ + G VIG+Q VR+SW ++PG W ++D N
Sbjct: 270 ATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADPN 322
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 182/250 (72%), Gaps = 17/250 (6%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPN-T 59
MDEN+++ CFAHTGE+VSAKVIRNKQTGQ EGYGF+EF S A AE+VLQ FN +P+
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 60 DQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
DQ FRLNWAS S+G++R + + D +IFVGDLA DVTD +L ETF + + S+KGAKVVID
Sbjct: 133 DQLFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVID 190
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAV 179
TGR+KGYGFVRF DE+E+ RAMTEMNGV CS RPMR+G A KK
Sbjct: 191 RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKG------------- 237
Query: 180 VLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK 239
+ G S + A G +D D NNTT+FVGGLD+ ++D+ L+ F Q+G++V VKIP GK
Sbjct: 238 -VTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Query: 240 GCGFVQFADR 249
CGFVQF+++
Sbjct: 297 RCGFVQFSEK 306
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/210 (60%), Positives = 151/210 (71%), Gaps = 15/210 (7%)
Query: 1 MDENYVHNCFAH--TGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPN 58
MDE Y+++ FA E+VS KVIRNK G SEGYGFVEF S A+KVL+ FNGT MPN
Sbjct: 112 MDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN 171
Query: 59 TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
TDQ FRLNWASFS GE+R E DLSIFVGDL+ DV+D +L ETF ++ S+K AKVV+
Sbjct: 172 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL 231
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXA 178
D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+KT G
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ------- 284
Query: 179 VVLAGGHPSNGAVAQGSQSDGDSNNTTIFV 208
GG+ NG + ++ +GD NTT+ V
Sbjct: 285 ---QGGYMPNGTL---TRPEGDIMNTTVIV 308
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 19/282 (6%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E + FA TG + S K+IR ++ YGFV ++ R A + NG + Q
Sbjct: 76 EILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTLNGRHI--FGQP 129
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S F+S A+V+ D T
Sbjct: 130 MKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDAALFDSF-SAFNSCSDARVMWDQKT 185
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV-L 181
GRS+G+GFV F ++ + A+ EMNG + S+R +R AT T+G +VV L
Sbjct: 186 GRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVEL 245
Query: 182 AGGHPSNGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPFLQFGD--VVSVKIP 236
G +G + S D NN TT++VG L +++ DL + F G + V++
Sbjct: 246 TNGSSEDG--RELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ 303
Query: 237 VGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 277
KG GFV++ A AI N + + +R SWG P
Sbjct: 304 RDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 345
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 149/280 (53%), Gaps = 15/280 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E + F TG V S+K+IR ++ YGFV ++ R +A + + NG + Q
Sbjct: 72 EPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSLNGRHL--FGQP 125
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S FSS A+V+ D T
Sbjct: 126 IKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDATLYQSF-SVFSSCSDARVMWDQKT 181
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV-L 181
GRS+G+GFV F ++ + A+ EMNG + S+R +R AT T G +VV L
Sbjct: 182 GRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVEL 241
Query: 182 AGGHPSNGAVAQGSQS-DGDSNNTTIFVGGLDSDISDEDLRQPF--LQFGDVVSVKIPVG 238
G +G ++ + +S TT++VG L +++ DL + F L G + V++
Sbjct: 242 TTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD 301
Query: 239 KGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 277
KG GFV++ A AI N + + ++ SWG P
Sbjct: 302 KGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKP 341
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 146/285 (51%), Gaps = 21/285 (7%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E + FA TG + S K+IR ++ YGFV ++ R A + NG + Q
Sbjct: 76 EILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTLNGRHI--FGQP 129
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG---SRFSSIKGAKVVID 119
++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S S + A+V+ D
Sbjct: 130 MKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAV 179
TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT T+G +V
Sbjct: 187 QKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSV 246
Query: 180 V-LAGGHPSNGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPFLQFGD--VVSV 233
V L G +G + S D NN TT++VG L +++ DL + F G + V
Sbjct: 247 VELTNGSSEDG--RELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEV 304
Query: 234 KIPVGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 277
++ KG GFV++ A AI N + + +R SWG P
Sbjct: 305 RVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 349
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 148/280 (52%), Gaps = 15/280 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E + FA TG V S K+IR +++ YGFV ++ R +A + + NG + Q
Sbjct: 67 EPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSLNGRHL--FGQP 120
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
++NWA +++G+R E +S +IFVGDL+ +VTDAML F S + + A+V+ D T
Sbjct: 121 IKVNWA-YASGQR--EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPTCSDARVMWDQKT 176
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV-L 181
GRS+G+GFV F ++ + A+ E+ G + +R +R AT T G +VV L
Sbjct: 177 GRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVEL 236
Query: 182 AGGHPSNGA-VAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPF--LQFGDVVSVKIPVG 238
G +G G + ++ TT++VG L ++S DL + F L G + V++
Sbjct: 237 TSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD 296
Query: 239 KGCGFVQFADRKNAEEAIHALN-GTVIGKQTVRLSWGRSP 277
KG GFV+++ A AI N + + + ++ SWG P
Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 336
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 147/279 (52%), Gaps = 16/279 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E + FA TG V S K+IR +++ YGFV ++ R +A + + NG + Q
Sbjct: 67 EPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSLNGRHL--FGQP 120
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
++NWA +++G+R E +S +IFVGDL+ +VTDAML F S + + A+V+ D T
Sbjct: 121 IKVNWA-YASGQR--EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPTCSDARVMWDQKT 176
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV-L 181
GRS+G+GFV F ++ + A+ E+ G + +R +R AT T G +VV L
Sbjct: 177 GRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVEL 236
Query: 182 AGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPF--LQFGDVVSVKIPVGK 239
G + G + ++ TT++VG L ++S DL + F L G + V++ K
Sbjct: 237 TSGDGKD--TTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDK 294
Query: 240 GCGFVQFADRKNAEEAIHALN-GTVIGKQTVRLSWGRSP 277
G GFV+++ A AI N + + + ++ SWG P
Sbjct: 295 GFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 333
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 31/283 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D +H F+ G +VS KV + GQS GYGFV+F + +A+ ++ NG ++ N
Sbjct: 145 VDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVL-NDK 202
Query: 61 QAFRLNWASFSAGERRSEAA--TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
Q F F E R AA +++V +L+ TD L+ TFG ++ SI A V+
Sbjct: 203 QIF---VGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFG-QYGSISSAVVMR 258
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXA 178
D + G+S+ +GFV F + + RA+ +NG ++ VG A K
Sbjct: 259 DGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK----------SERE 307
Query: 179 VVLAGGHPSNGAVAQGSQSDGDS-NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-- 235
+ L+ + QGS G+ + ++V LD ++DE LR+ F +FG + S K+
Sbjct: 308 LELSRRY------EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR 361
Query: 236 -PVG--KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 275
P G KG GFV F+ A ++ +NG ++G + + ++ +
Sbjct: 362 DPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 42/262 (16%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+++ F +VVS +V R+ T S GYG+V + + AEK +Q N + + + R+
Sbjct: 62 LYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYL--NGKMIRI 119
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++S + RRS ++FV +L V + L E F S +I KV D + G+S
Sbjct: 120 TYSSRDSSARRSGVG----NLFVKNLDKSVDNKTLHEAF-SGCGTIVSCKVATD-HMGQS 173
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
+GYGFV+F E+ A+ ++NG +++ + VG K+
Sbjct: 174 RGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEE------------------- 214
Query: 186 PSNGAVAQGSQSDGDSNN-TTIFVGGLDSDISDEDLRQPFLQFGDVVS-VKIPVGKG--- 240
+S D T ++V L +D++L+ F Q+G + S V + G G
Sbjct: 215 ---------RESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSR 265
Query: 241 C-GFVQFADRKNAEEAIHALNG 261
C GFV F + ++A A+ ALNG
Sbjct: 266 CFGFVNFENPEDAARAVEALNG 287
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
++ + F G + SA V+R+ G+S +GFV F + A + ++ NG D+
Sbjct: 238 DDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKF--DDKE 294
Query: 63 FRLNWASFSAGE-----RRSEAATSD-------LSIFVGDLAIDVTDAMLQETFGSRFSS 110
+ + A + RR E +SD L+++V +L VTD L+E F + F +
Sbjct: 295 WYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELF-AEFGT 353
Query: 111 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
I KV+ D +G SKG GFV F +E +R + EMNG +P+ V +A K+
Sbjct: 354 ITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKE 407
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 46/264 (17%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+ + F G VV+ +V R+ T +S GYG+V F + A + +Q N +P + R+
Sbjct: 52 LFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLYGKPIRV 109
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++ RRS A +IF+ +L + L +TF S F +I KV +DS +G+S
Sbjct: 110 MYSHRDPSVRRSGAG----NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVDS-SGQS 163
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KGYGFV++ +E +A+ ++NG+ +++ + V
Sbjct: 164 KGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV--------------------------- 196
Query: 186 PSNGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----V 237
G + + D +N T ++V L +D+DL+ F ++G + S +
Sbjct: 197 ---GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 253
Query: 238 GKGCGFVQFADRKNAEEAIHALNG 261
KG GFV F + +A A+ +LNG
Sbjct: 254 SKGFGFVNFENADDAARAVESLNG 277
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 37/190 (19%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL +VTD+ L + FG + ++ +V D T RS GYG+V F + + RA+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFG-QMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
E+N + +P+R V+ + PS + G N
Sbjct: 96 ELNYIPLYGKPIR---------------------VMYSHRDPS-------VRRSGAGN-- 125
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
IF+ LD I + L F FG++VS K+ V KG GFVQ+A+ ++A++AI L
Sbjct: 126 -IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 185 NGMLLNDKQV 194
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 13/170 (7%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAF-R 64
+ N F G++ SA V+++ + G+S+G+GFV F + A + +++ NG + + R
Sbjct: 231 LKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 65 LNWASFSAGERR-------SEAATSDLS--IFVGDLAIDVTDAMLQETFGSRFSSIKGAK 115
S E R EAA S ++V +L ++D L+E F S F ++ +K
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIF-SPFGTVTSSK 348
Query: 116 VVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
V+ D N G SKG GFV F E T AM++++G ++P+ V +A K+
Sbjct: 349 VMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 130/272 (47%), Gaps = 42/272 (15%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E +++ FA + S ++ ++ +G+S YG+ F SR A ++ N +++ +
Sbjct: 37 EGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKM 94
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
R+ W+ + RR+ ++FV +L VT+A+LQ+ F +F +I KV +
Sbjct: 95 IRVMWSVRAPDARRNGVG----NVFVKNLPESVTNAVLQDMF-KKFGNIVSCKVATLED- 148
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLA 182
G+S+GYGFV+F E+ A+ +N +++ + VG KKT
Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM-KKT---------------- 191
Query: 183 GGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----V 237
+ + T +++ LD+D+S++ LR+ F +FG +VS+ I +
Sbjct: 192 ------------DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL 239
Query: 238 GKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 269
+G FV F + ++A A +NGT G + +
Sbjct: 240 CRGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMM---- 56
+ E+ + FA G++VS + ++ + GY FV F + A + + NGT
Sbjct: 212 VSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKC 270
Query: 57 ---------PNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 107
+Q R + E++ A S+ I+V ++ + VT+ L++ F S+
Sbjct: 271 LYVGRAQKKAEREQLLREQFKE-KHEEQKMIAKVSN--IYVKNVNVAVTEEELRKHF-SQ 326
Query: 108 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
+I K++ D G+SKG+GFV F E A+ +G +P+ V +A K+
Sbjct: 327 CGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 31/283 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + + F+ G+V+S KV R+ +G S+GYGFV+FYS + NGT++ N
Sbjct: 42 IDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQ- 99
Query: 61 QAFRLNWASF-SAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
++ F S G+ +S T +++V +L TDA L+ FG F I A VV+
Sbjct: 100 ---HIHVCPFVSRGQWDKSRVFT---NVYVKNLVETATDADLKRLFGE-FGEITSA-VVM 151
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXA 178
G+S+ +GFV F A+ +MNGV + + VG A K
Sbjct: 152 KDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELE 211
Query: 179 VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV- 237
++ G ++V LD + + L + F +FG + S K+ V
Sbjct: 212 KIIRDMKTRKG--------------MNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH 257
Query: 238 ----GKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 276
KG GFV+F+ + A +A+ +NG ++G + + +S +
Sbjct: 258 SNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQC 300
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAF-----R 64
F GE+ SA V+++ + G+S +GFV F A ++ NG ++ + +
Sbjct: 139 FGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK 197
Query: 65 LNWASFSAGERRSEAATSDL------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
N + E D+ +++V +L V + L+E F S F +I KV++
Sbjct: 198 TNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELF-SEFGTITSCKVMV 256
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 167
SN G SKG GFV F E ++AM +MNG N+P+ V +A K+ +
Sbjct: 257 HSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQH 304
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 40/261 (15%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+ F G+VVS +V R+ T +S GYG+V + + A + L N M +A R+
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN--FMALNGRAIRV 118
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++ R+S +IF+ +L + L ETF S F I KV +D +G+S
Sbjct: 119 MYSVRDPSLRKSGVG----NIFIKNLDKSIDHKALHETF-SAFGPILSCKVAVDP-SGQS 172
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KGYGFV++ + A+ ++NG+ +++ + VG K
Sbjct: 173 KGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHK--------------------- 211
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKG 240
Q S T ++V L +SDE+L + F +FG S I KG
Sbjct: 212 ------LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 265
Query: 241 CGFVQFADRKNAEEAIHALNG 261
GFV F + +A A+ ALNG
Sbjct: 266 FGFVNFENSDDAARAVDALNG 286
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL VTD+ L E F ++ + +V D T RS GYG+V + + +RA+
Sbjct: 46 SLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
E+N + + R +R V+ + PS G+
Sbjct: 105 ELNFMALNGRAIR---------------------VMYSVRDPSLRKSGVGN--------- 134
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
IF+ LD I + L + F FG ++S K+ V KG GFVQ+ + A+ AI L
Sbjct: 135 -IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 194 NGMLLNDKQV 203
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 19/178 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+ + ++ F G S ++R+ + G+S+G+GFV F + A + + NG D
Sbjct: 235 LSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTF--DD 291
Query: 61 QAFRLNWASFSAGERRSEAA---------TSDLS----IFVGDLAIDVTDAMLQETFGSR 107
+ + + A ER +E +D S ++V +L VTD L+E F
Sbjct: 292 KEWFVGKAQ-KKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAP- 349
Query: 108 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
F +I KV+ D +G S+G GFV F E TRA+TEMNG +P+ V +A K+
Sbjct: 350 FGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKE 406
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 40/261 (15%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+ F G+VVS +V R+ T +S GYG+V + + A + L N M +A R+
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN--FMALNGRAIRV 118
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++ R+S +IF+ +L + L ETF S F I KV +D +G+S
Sbjct: 119 MYSVRDPSLRKSGVG----NIFIKNLDKSIDHKALHETF-SAFGPILSCKVAVDP-SGQS 172
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KGYGFV++ + A+ ++NG+ +++ + VG K
Sbjct: 173 KGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHK--------------------- 211
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKG 240
Q S T ++V L +SDE+L + F +FG S I KG
Sbjct: 212 ------LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 265
Query: 241 CGFVQFADRKNAEEAIHALNG 261
GFV F + +A A+ ALNG
Sbjct: 266 FGFVNFENSDDAARAVDALNG 286
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL VTD+ L E F ++ + +V D T RS GYG+V + + +RA+
Sbjct: 46 SLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
E+N + + R +R V+ + PS G+
Sbjct: 105 ELNFMALNGRAIR---------------------VMYSVRDPSLRKSGVGN--------- 134
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
IF+ LD I + L + F FG ++S K+ V KG GFVQ+ + A+ AI L
Sbjct: 135 -IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 194 NGMLLNDKQV 203
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 19/178 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+ + ++ F G S ++R+ + G+S+G+GFV F + A + + NG D
Sbjct: 235 LSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTF--DD 291
Query: 61 QAFRLNWASFSAGERRSEAA---------TSDLS----IFVGDLAIDVTDAMLQETFGSR 107
+ + + A ER +E +D S ++V +L VTD L+E F
Sbjct: 292 KEWFVGKAQ-KKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAP- 349
Query: 108 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
F +I KV+ D +G S+G GFV F E TRA+TEMNG +P+ V +A K+
Sbjct: 350 FGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKE 406
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 39/268 (14%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E ++ + F H VVS +V R+ Q +S GY ++ F + A + ++ N T P D+
Sbjct: 62 EAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRP 118
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
R+ ++ R S +IF+ +L + + L ETF S F +I KV +D T
Sbjct: 119 IRIMLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMDV-T 172
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLA 182
GRSKGYGFV+F E A+ ++NG+ +++ + VG ++
Sbjct: 173 GRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERAR------------- 219
Query: 183 GGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG-- 240
++ T ++V L +I +++LR+ F +FG + S + +
Sbjct: 220 ------------DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN 267
Query: 241 --C-GFVQFADRKNAEEAIHALNGTVIG 265
C GFV F + A A+ +NG +G
Sbjct: 268 SRCFGFVNFECTEAAASAVEKMNGISLG 295
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 38/190 (20%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++ GDL VT+A L + F +++ +V D N RS GY ++ F + N+ RAM
Sbjct: 50 SLYAGDLDPKVTEAHLFDLF-KHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
+N +RP+R+ +L+ PS +G+
Sbjct: 108 ALNYTPLFDRPIRI---------------------MLSNRDPSTRLSGKGN--------- 137
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
IF+ LD+ I ++ L + F FG ++S K+ + KG GFVQF ++A+ AI L
Sbjct: 138 -IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 197 NGMLMNDKQV 206
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E+ + F G + SA V+R+ Q+G S +GFV F A ++ NG + D
Sbjct: 242 EDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISL--GDDV 298
Query: 63 FRLNWASFSAGERRSEA-------------ATSDLSIFVGDLAIDVTDAMLQETFGSRFS 109
+ A ER E + ++++ +L V D L+E F S +
Sbjct: 299 LYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMF-SEYG 356
Query: 110 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
++ +KV+++ G S+G+GFV + + E RA++EMNG +P+ + +A K+
Sbjct: 357 NVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKE 411
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 127/274 (46%), Gaps = 39/274 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
++E+++ + F V + +V R+ T +S GY +V F + A + +++ N P D
Sbjct: 70 VNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLN--YAPIRD 126
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ R+ ++ R S ++F+ +L + + L ETF S F +I KV +D
Sbjct: 127 RPIRIMLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSS-FGTILSCKVAMDV 181
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
GRSKGYGFV+F E A+ ++NG+ +++ + VG ++
Sbjct: 182 -VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR----------- 229
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV--- 237
S+S + T ++V L +I+D++L++ F ++GD+ S +
Sbjct: 230 --------------SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS 275
Query: 238 --GKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 269
+ GFV F + A A+ +NG +G+ +
Sbjct: 276 GNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 38/190 (20%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL V ++ L + F ++ + + +V D T RS GY +V F + + +RAM
Sbjct: 60 SLYVGDLDPSVNESHLLDLF-NQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
+N +RP+R+ +L+ PS +G+
Sbjct: 118 SLNYAPIRDRPIRI---------------------MLSNRDPSTRLSGKGN--------- 147
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
+F+ LD+ I ++ L + F FG ++S K+ + KG GFVQF + A+ AI L
Sbjct: 148 -VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 207 NGMLLNDKQV 216
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
++ + F G++ SA V+++ Q+G S +GFV F S A ++ NG + D
Sbjct: 252 DDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVL 309
Query: 63 F--RLNWASFSAGERRSEAATSDLS---------IFVGDLAIDVTDAMLQETFGSRFSSI 111
+ R S E R + +S +++ +L V D L+E F S + ++
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMF-SEYGNV 368
Query: 112 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
KV+++S G S+G+GFV + + E AM EMNG +P+ V +A K+
Sbjct: 369 TSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE 421
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 127/274 (46%), Gaps = 39/274 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
++E+++ + F V + +V R+ T +S GY +V F + A + +++ N P D
Sbjct: 70 VNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLN--YAPIRD 126
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ R+ ++ R S ++F+ +L + + L ETF S F +I KV +D
Sbjct: 127 RPIRIMLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSS-FGTILSCKVAMDV 181
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
GRSKGYGFV+F E A+ ++NG+ +++ + VG ++
Sbjct: 182 -VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR----------- 229
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV--- 237
S+S + T ++V L +I+D++L++ F ++GD+ S +
Sbjct: 230 --------------SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS 275
Query: 238 --GKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 269
+ GFV F + A A+ +NG +G+ +
Sbjct: 276 GNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 38/190 (20%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL V ++ L + F ++ + + +V D T RS GY +V F + + +RAM
Sbjct: 60 SLYVGDLDPSVNESHLLDLF-NQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
+N +RP+R+ +L+ PS +G+
Sbjct: 118 SLNYAPIRDRPIRI---------------------MLSNRDPSTRLSGKGN--------- 147
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
+F+ LD+ I ++ L + F FG ++S K+ + KG GFVQF + A+ AI L
Sbjct: 148 -VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 207 NGMLLNDKQV 216
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
++ + F G++ SA V+++ Q+G S +GFV F S A ++ NG + D
Sbjct: 252 DDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVL 309
Query: 63 F--RLNWASFSAGERRSEAATSDLS---------IFVGDLAIDVTDAMLQETFGSRFSSI 111
+ R S E R + +S +++ +L V D L+E F S + ++
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMF-SEYGNV 368
Query: 112 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
KV+++S G S+G+GFV + + E AM EMNG +P+ V +A K+
Sbjct: 369 TSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE 421
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFN-----GTMMPNTDQAF 63
F G V A+VI N++T QS G+GFV S AE ++ FN G ++ A
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 228
Query: 64 RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTG 123
R S ER ++VG+L DV + L++ F S + A+VV D TG
Sbjct: 229 R-----GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETG 282
Query: 124 RSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA---TPKKTY 167
RS+G+GFV D +E A++ ++G R +RV VA P++ Y
Sbjct: 283 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 38/265 (14%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F+ VVS + RN TG+S Y ++ F S +A + N + + +A R+ W+
Sbjct: 41 FSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDL--KGKAMRIMWSQ 98
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
RR T +++V +L +T + L+ F F SI KVV ++ G+SKG+G
Sbjct: 99 RDLAYRR-RTRTGFANLYVKNLDSSITSSCLERMFCP-FGSILSCKVVEEN--GQSKGFG 154
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNG 189
FV+F E A + ++G + + V K
Sbjct: 155 FVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKD---------------------ERA 193
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFV 244
A+A G+ ++T ++V L ++D+ L F Q+G V SV + +G GFV
Sbjct: 194 AMA------GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFV 247
Query: 245 QFADRKNAEEAIHALNGTVIGKQTV 269
F + +NA++A+ +L G +G + +
Sbjct: 248 NFCNPENAKKAMESLCGLQLGSKKL 272
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 1 MDENYVHNC----FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMM 56
+D + +C F G ++S KV+ ++ GQS+G+GFV+F + +A +G+M+
Sbjct: 119 LDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMV 176
Query: 57 PNTDQAFRLNWASF-SAGERRSEAATSD-LSIFVGDLAIDVTDAMLQETFGSRFSSIKGA 114
+L A F + ER + A D +++V +L VTD L F S++ ++
Sbjct: 177 YGK----KLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-SQYGTVSSV 231
Query: 115 KVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXX 174
VV+ GRS+G+GFV F + +AM + G+ ++ + VG A K
Sbjct: 232 -VVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQK 290
Query: 175 XXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK 234
S+ +A+ + + ++V L +++ LR+ F +G +VS K
Sbjct: 291 F-----------SDNFIAK-----PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAK 334
Query: 235 IPV-----GKGCGFVQFADRKNAEEAIHALNGTVI-GKQTV 269
+ KG GFV F++ + +++A LNG ++ GK V
Sbjct: 335 VMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+H F+ G V S V+R+ G+S G+GFV F + A+K +++ G + + +L
Sbjct: 218 LHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSK----KL 272
Query: 66 NWASFSAGERRSEAATSDLS-------------IFVGDLAIDVTDAMLQETFGSRFSSIK 112
+ R E S ++V +L+ + + L+E FG + I
Sbjct: 273 FVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGC-YGQIV 331
Query: 113 GAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
AKV+ N GRSKG+GFV F + E +A +NG +P+ V VA K+
Sbjct: 332 SAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKE 383
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + F G V ++VI N+ T QS G+GFV + AEK ++ FN +
Sbjct: 124 VDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEV--NG 181
Query: 61 QAFRLNWASF--SAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
+ +N A+ S ER+ + I+VG+L DV L+ F S + A+VV
Sbjct: 182 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVS 240
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 161
D TGRS+G+GFV+ +ENE A+ ++G R ++V VA
Sbjct: 241 DRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 19 AKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAGERRSE 78
+V+ N+ TGQS G+ FV + ++ N +GT +A ++N+A +
Sbjct: 114 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEY--LGRALKVNFADKPKPNKEPL 171
Query: 79 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 138
++ +FVG+L+ VT L F + GA+VV D +TGRS+GYGFV + + E
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAF-RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 230
Query: 139 RTRAMTEMNGVFCSNRPMRVGVATPKK 165
A+ ++G R +RV +A KK
Sbjct: 231 METALESLDGFELEGRAIRVNLAQGKK 257
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+ E + F G VV+ V +++ T + YGF+E+ S A+ ++ N M+
Sbjct: 36 LSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLN--MIKLHG 93
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ R+N AS +++S ++L F+G+L DV + +L +TF + K++ D
Sbjct: 94 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDP 148
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 168
+TG S+G+GF+ + A+ M G + SNR + V A K T G
Sbjct: 149 DTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKG 196
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGK 239
P GA G S + + T++VGGLD+ +S+E L + F+Q G VV+V +P + +
Sbjct: 7 PGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 240 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 272
GF+++ ++A+ AI LN + + +R++
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVN 99
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+ F G VV +++ +K T +S G+GFV S A++ +Q FN + + + ++
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI--GGRTVKV 189
Query: 66 NWASFSAGERRSEAAT-----------SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGA 114
N+ G T S ++ G+L ++T L++ FG + + GA
Sbjct: 190 NFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQ-PGVLGA 248
Query: 115 KVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
KV+ + NTGRS+G+GF+ F A+ MNGV R +R+ +A+ ++
Sbjct: 249 KVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 77 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 136
++A+ + ++VG+L +T + L + FG ++ ++V D T RS+G+GFV G
Sbjct: 109 TQASGEEGRLYVGNLPYTITSSELSQIFGEA-GTVVDVQIVYDKVTDRSRGFGFVTMGSI 167
Query: 137 NERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQ 196
E AM N R ++V P+ G + ++
Sbjct: 168 EEAKEAMQMFNSSQIGGRTVKVNF--PEVPRGGENEVMRTK-------------IRDNNR 212
Query: 197 SDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRK 250
S DS + ++ G L +++ + L+ F V+ K+ +G GF+ F +
Sbjct: 213 SYVDSPHK-VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAE 271
Query: 251 NAEEAIHALNGTVIGKQTVRLSWG 274
N + A+ +NG + + +RL+
Sbjct: 272 NVQSALATMNGVEVEGRALRLNLA 295
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 77 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 136
SE +D +F GDL +V D +L + F +RF + AKV+ D TG++KGYGFV F +
Sbjct: 130 SEWPENDYRLFCGDLGNEVNDDVLSKAF-ARFPTFNMAKVIRDKRTGKTKGYGFVSFLNP 188
Query: 137 NERTRAMTEMNGVFCSNRPMRV 158
+ A+ EMNG + NRP+++
Sbjct: 189 ADLAAALKEMNGKYVGNRPIKL 210
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 74 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 133
E++ E+A+ +F+G ++ D + LQE FG ++ + A ++ D TGR++G+GF+ F
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 134 GDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 193
D + R + M+ R + A P+ ++ PS+G
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLI----SPSHGGNGG 117
Query: 194 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFA 247
G+++ IFVGGL S I++ + + F QFG + V + +G GF+ F
Sbjct: 118 GART------KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 171
Query: 248 DRKNAE----EAIHALNGTVI 264
++ + + H LNG ++
Sbjct: 172 SEESVDMVLHKTFHELNGKMV 192
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
DE + F G++V A ++R++ TG++ G+GF+ F + AE+V+ + +G
Sbjct: 27 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEA 86
Query: 54 -TMMPNTDQ------AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 106
+P DQ A ++ S S G A T IFVG L +T+A + F
Sbjct: 87 KKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK--KIFVGGLPSSITEAEFKNYF-D 143
Query: 107 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE----RTRAMTEMNGVFCSNR---PMRVG 159
+F +I V+ D NT R +G+GF+ F E + E+NG + P +
Sbjct: 144 QFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELS 203
Query: 160 VATPKKT 166
TP ++
Sbjct: 204 STTPNRS 210
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 74 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 133
E++ E+A+ +F+G ++ D + LQE FG ++ + A ++ D TGR++G+GF+ F
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVF 60
Query: 134 GDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 193
D + R + M+ R + A P+ ++ PS+G
Sbjct: 61 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLI----SPSHGGNGG 114
Query: 194 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFA 247
G+++ IFVGGL S I++ + + F QFG + V + +G GF+ F
Sbjct: 115 GART------KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 168
Query: 248 DRKNAE----EAIHALNGTVI 264
++ + + H LNG ++
Sbjct: 169 SEESVDMVLHKTFHELNGKMV 189
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
DE + F G++V A ++R++ TG++ G+GF+ F + AE+V+ + +G
Sbjct: 24 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEA 83
Query: 54 -TMMPNTDQ------AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 106
+P DQ A ++ S S G A T IFVG L +T+A + F
Sbjct: 84 KKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK--KIFVGGLPSSITEAEFKNYF-D 140
Query: 107 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE----RTRAMTEMNGVFCSNR---PMRVG 159
+F +I V+ D NT R +G+GF+ F E + E+NG + P +
Sbjct: 141 QFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELS 200
Query: 160 VATPKKT 166
TP ++
Sbjct: 201 STTPNRS 207
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F GE+ + ++++++TGQ G+GFV + + +KV+Q+ + + + + S
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGS 121
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
S+ + +++ IFVG + V D +E F +F +K +++ D +TGRS+G+G
Sbjct: 122 MSSNDFKTKK------IFVGGIPSSVDDDEFKEFF-MQFGELKEHQIMRDHSTGRSRGFG 174
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
FV + E+ + + N + S + + A PKK
Sbjct: 175 FVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr1:2260562-2262795 REVERSE
LENGTH=481
Length = 481
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 196 QSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEA 255
+S D + T++VGGL+S I ++D+R F G++ S++I K C FV + R+ AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 256 IHAL-NGTVIGKQTVRLSWGR 275
L N VI Q ++L+WGR
Sbjct: 280 AQELSNRLVINGQRLKLTWGR 300
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 27/191 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + F G V +VI +K TG+S G+GFV S + E Q FNG +
Sbjct: 102 VDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYEL--DG 159
Query: 61 QAFRLNWAS--------FSAGERRSEAATSDLS-------------IFVGDLAIDVTDAM 99
+ R+N FS G R S ++ ++VG+L+ V D
Sbjct: 160 RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMA 219
Query: 100 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 159
L+ F + ++ A+V+ D ++GRSKG+GFV + E A+ ++G R +RV
Sbjct: 220 LESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Query: 160 VA---TPKKTY 167
A P++ Y
Sbjct: 279 EAEARPPRRQY 289
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 76 RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGD 135
+ ++ ++DL +FVG+L +V A L + F S +++ +V+ D TGRS+G+GFV
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 136 ENERTRAMTEMNGVFCSNRPMRV--GVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 193
+E A + NG RP+RV G PK+ G S+G+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFG--------SSGSGYG 193
Query: 194 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFA 247
G G + ++VG L + D L F + G VV ++ KG GFV +
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 248 DRKNAEEAIHALNGTVIGKQTVRLS 272
+ + AI +L+G + + +R+S
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRVS 278
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F GE+ + ++R++ TGQ G+GF+ F + +KV+++ T + N Q
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED---THVINGKQVEIKRTIP 95
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
AG +S+ + IFVG + VT+ L++ F +++ ++ +V+ D T RS+G+G
Sbjct: 96 KGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF-AKYGNVVEHQVIRDHETNRSRGFG 153
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 166
FV F E +++ N + ++ + + A PKK+
Sbjct: 154 FVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKS 190
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IF+G L D T+ + + FG ++ I + ++ D +TG+ +G+GF+ F D + + + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFG-KYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + + + + PK A G+QS D
Sbjct: 80 TH--VINGKQVEIKRTIPKG--------------------------AGGNQSK-DIKTKK 110
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKI------PVGKGCGFVQFADRKNAEEAIHAL 259
IFVGG+ S +++++L+ F ++G+VV ++ +G GFV F ++EE + L
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDEL 166
>AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:12652011-12654158 FORWARD
LENGTH=483
Length = 483
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 196 QSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEA 255
+S D + T++VGGL+S + ++D+R F G++ S++I K C FV + R+ AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 256 IHAL-NGTVIGKQTVRLSWGR 275
L N V+ Q ++L+WGR
Sbjct: 280 AEELSNRLVVNGQRLKLTWGR 300
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 8 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNW 67
N F GEVV + ++ ++ TG G+GFV F A AEKVL+ + D+ L
Sbjct: 84 NYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVI----DDRKVDLK- 138
Query: 68 ASFSAGERRSE--AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
+ G++ ++ A + IFVG L + + L+ F + I +++ D +TGRS
Sbjct: 139 RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF-CVYGDIIEHQIMYDHHTGRS 197
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 166
+G+GFV F E+ R ++ ++ + + A PK+T
Sbjct: 198 RGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRT 238
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGT------- 54
DEN + F++ GEV+ V+R K TG+ G+GFV F A ++VLQ+ +
Sbjct: 18 DENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDV 77
Query: 55 --MMPNTDQAFRLNWASFSAGER-RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 111
M +Q+ +F+A S A IFVG L +T + F + +
Sbjct: 78 KRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYF-ETYGPV 136
Query: 112 KGAKVVIDSNTGRSKGYGFVRFGDEN 137
A ++ID T R +G+GFV F E+
Sbjct: 137 SDAVIMIDQTTQRPRGFGFVSFDSED 162
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 22/189 (11%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + +L+E F S F + V+ + TGR +G+GFV F D R + +
Sbjct: 8 LFIGGISWDTDENLLREYF-SNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + NR + V A ++ A ++ S +
Sbjct: 67 KHHI--DNRDVDVKRAMSREEQSPAGRSGTFNA-------------SRNFDSGANVRTKK 111
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 259
IFVGGL ++ ++ R F +G V I + +G GFV F + + +H
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 260 NGTVIGKQT 268
+ GKQ
Sbjct: 172 FHDLNGKQV 180
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNT 59
E+ + + F GEV+ A +++++ TG++ G+GFV F AE+V+ +G ++
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Query: 60 DQAFRLNWASF---SAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKV 116
R + F ++ + S ++ IFVG LA VT+A ++ F ++F I V
Sbjct: 79 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF-AQFGMITDVVV 137
Query: 117 VIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPK 164
+ D T R +G+GF+ + E + + E+NG + + V +A PK
Sbjct: 138 MYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG-----KMVEVKLAVPK 184
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNT 59
E+ + + F GEV+ A +++++ TG++ G+GFV F AE+V+ +G ++
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Query: 60 DQAFRLNWASF---SAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKV 116
R + F ++ + S ++ IFVG LA VT+A ++ F ++F I V
Sbjct: 79 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF-AQFGMITDVVV 137
Query: 117 VIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPK 164
+ D T R +G+GF+ + E + + E+NG + + V +A PK
Sbjct: 138 MYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG-----KMVEVKLAVPK 184
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 146 MNGVFCSNRPMRVGVATPKKT 166
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNG 53
D+ + + FAH G+VV AKVI +++TG+S G+GFV F A + +G
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 146 MNGVFCSNRPMRVGVATPKKT 166
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNG 53
D+ + + FAH G+VV AKVI +++TG+S G+GFV F A + +G
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 146 MNGVFCSNRPMRVGVATPKKT 166
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNG 53
D+ + + FAH G+VV AKVI +++TG+S G+GFV F A + +G
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 146 MNGVFCSNRPMRVGVATPKKT 166
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTM--- 55
+E + F+ GEV+ A +++++ TG++ G+GFV F A AE V+ N +G +
Sbjct: 18 NEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEA 77
Query: 56 ---MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIK 112
+P DQ +N ++ S+ + IFVG L VT++ + F +F +
Sbjct: 78 KKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYF-EQFGTTT 135
Query: 113 GAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNG 148
V+ D NT R +G+GF+ + E + + E+NG
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG 175
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L+E F S F + A ++ D TGR++G+GFV F D +TE
Sbjct: 8 LFIGGISWDTNEERLKEYF-SSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + R + A P+ SN + QGS G
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNR--------------SNSSSIQGSPG-GPGRTRK 109
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI--- 256
IFVGGL S +++ D + F QFG V + +G GF+ + + E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 257 -HALNGTVI 264
H LNG ++
Sbjct: 170 FHELNGKMV 178
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTM--- 55
+E + F+ GEV+ A +++++ TG++ G+GFV F A AE V+ N +G +
Sbjct: 18 NEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEA 77
Query: 56 ---MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIK 112
+P DQ +N ++ S+ + IFVG L VT++ + F +F +
Sbjct: 78 KKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYF-EQFGTTT 135
Query: 113 GAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPKK 165
V+ D NT R +G+GF+ + E + + E+NG + + V A PK+
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG-----KMVEVKRAVPKE 187
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L+E F S F + A ++ D TGR++G+GFV F D +TE
Sbjct: 8 LFIGGISWDTNEERLKEYF-SSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + R + A P+ SN + QGS G
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNR--------------SNSSSIQGSPG-GPGRTRK 109
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI--- 256
IFVGGL S +++ D + F QFG V + +G GF+ + + E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 257 -HALNGTVI 264
H LNG ++
Sbjct: 170 FHELNGKMV 178
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V+ + +G
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 54 -TMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 105
+P DQ AS G R++ IFVG L +T+ + F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSITEEEFKNYF- 130
Query: 106 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVA 161
+F +I V+ D NT R +G+GF+ F ++ R + E+NG + V A
Sbjct: 131 DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL-----VEVKRA 185
Query: 162 TPKK 165
PK+
Sbjct: 186 VPKE 189
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V+ + +G
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 54 -TMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 105
+P DQ AS G R++ IFVG L +T+ + F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSITEEEFKNYF- 130
Query: 106 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVA 161
+F +I V+ D NT R +G+GF+ F ++ R + E+NG + V A
Sbjct: 131 DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL-----VEVKRA 185
Query: 162 TPKK 165
PK+
Sbjct: 186 VPKE 189
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFN--------- 52
DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V+ + +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 53 GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 105
+P DQ AS G R++ IFVG L +T+ + F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKK------IFVGGLPSSITEEEFKNYF- 130
Query: 106 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVA 161
+F +I V+ D NT R +G+GF+ F ++ R + E+NG + V A
Sbjct: 131 DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL-----VEVKRA 185
Query: 162 TPKK 165
PK+
Sbjct: 186 VPKE 189
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFN--------- 52
DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V+ + +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 53 GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 105
+P DQ AS G R++ IFVG L +T+ + F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKK------IFVGGLPSSITEEEFKNYF- 130
Query: 106 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVA 161
+F +I V+ D NT R +G+GF+ F ++ R + E+NG + V A
Sbjct: 131 DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL-----VEVKRA 185
Query: 162 TPKK 165
PK+
Sbjct: 186 VPKE 189
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG ++ + + L+E F + + + A V+ D TGR +G+GFV F D + R + E
Sbjct: 8 LFVGGISWETDEDKLREHF-TNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + R + V A ++ G N ++ S D +
Sbjct: 67 KHSI--DTREVDVKRAMSREEQ-------------QVSGRTGNLNTSRSSGGDAYNKTKK 111
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHAL 259
IFVGGL ++DE+ RQ F +G V V I +G GFV F + +H
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 260 NGTVIGKQ 267
+ GKQ
Sbjct: 172 FHDLSGKQ 179
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD- 60
DE+ + F + GEV A V+R+K TG+ G+GFV F + ++VLQ + D
Sbjct: 18 DEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDV 77
Query: 61 -------------QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 107
+ LN + S G +A IFVG L +TD ++ F
Sbjct: 78 KRAMSREEQQVSGRTGNLNTSRSSGG----DAYNKTKKIFVGGLPPTLTDEEFRQYF-EV 132
Query: 108 FSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 137
+ + ++ D T R +G+GFV F E+
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSED 162
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF-NGTMMPNTDQ 61
E + F G V+ +I++K+TGQ +G FV++ + A++ ++ N +P
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTG 192
Query: 62 AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
++ +A GE R T + +FVG L T+ ++E F +F ++ ++ D
Sbjct: 193 PVQVRYAD---GE-RERIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGHVEDVYLMRDEY 247
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 165
+S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 248 R-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
+S + +FVG + T+ ++ F + ++ ++ D TG+ +G FV++ +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH-PSNGAVAQGSQSDG 199
RA+ ++ + L GG P A G +
Sbjct: 176 RAIRALHN-----------------------------QITLPGGTGPVQVRYADGERERI 206
Query: 200 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEE 254
+ +FVG L+ +++++ + FLQFG V V + +GCGFV+++ ++ A
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 255 AIHALNGT 262
AI LNGT
Sbjct: 267 AIDGLNGT 274
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF-NGTMMPNTDQ 61
E + F G V+ +I++K+TGQ +G FV++ + A++ ++ N +P
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTG 192
Query: 62 AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
++ +A GER T + +FVG L T+ ++E F +F ++ ++ D
Sbjct: 193 PVQVRYAD---GERE-RIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGHVEDVYLMRDEY 247
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 165
+S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 248 R-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
+S + +FVG + T+ ++ F + ++ ++ D TG+ +G FV++ +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH-PSNGAVAQGSQSDG 199
RA+ ++ + L GG P A G +
Sbjct: 176 RAIRALHN-----------------------------QITLPGGTGPVQVRYADGERERI 206
Query: 200 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEE 254
+ +FVG L+ +++++ + FLQFG V V + +GCGFV+++ ++ A
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 255 AIHALNGT 262
AI LNGT
Sbjct: 267 AIDGLNGT 274
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF-NGTMMPNTDQ 61
E + F G V+ +I++K+TGQ +G FV++ + A++ ++ N +P
Sbjct: 58 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTG 117
Query: 62 AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
++ +A GER T + +FVG L T+ ++E F +F ++ ++ D
Sbjct: 118 PVQVRYAD---GERE-RIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGHVEDVYLMRDEY 172
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 165
+S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 173 R-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 218
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
+S + +FVG + T+ ++ F + ++ ++ D TG+ +G FV++ +
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 100
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH-PSNGAVAQGSQSDG 199
RA+ ++ + L GG P A G +
Sbjct: 101 RAIRALHN-----------------------------QITLPGGTGPVQVRYADGERERI 131
Query: 200 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEE 254
+ +FVG L+ +++++ + FLQFG V V + +GCGFV+++ ++ A
Sbjct: 132 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 191
Query: 255 AIHALNGT 262
AI LNGT
Sbjct: 192 AIDGLNGT 199
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
++F +A+ T+ + E F SR ++ ++++D + RS+G G+V F D A+
Sbjct: 232 TVFAYQIALRATERDVYEFF-SRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 290
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
++G +P+ V + +K +L G S GA
Sbjct: 291 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGML--GPYSGGA-------------R 334
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHAL 259
++VG L ++S++DLR+ F FG V V++P + KG GFVQFA ++A A++ L
Sbjct: 335 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-L 393
Query: 260 NGTV-IGKQTVRLS 272
NG + I + +++S
Sbjct: 394 NGQLEIAGRAIKVS 407
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 79 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 138
AA IFVG L+ +VTD L+ F SRF I +++++ +TGRS+G+GF+ F D
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
Query: 139 RTRAMTEMNGVFCSNRPMRVGVATPK 164
++ EM+G +R + V A PK
Sbjct: 61 MDESIREMHGRDFGDRVISVNRAEPK 86
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 204 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 257
+ IFVGGL +++D DL + F +FGD++ +I + +G GF+ FADR+ +E+I
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 258 ALNGTVIGKQTVRLS-----WGRSPGNKH 281
++G G + + ++ GR G H
Sbjct: 67 EMHGRDFGDRVISVNRAEPKLGRDDGESH 95
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
++F +A+ T+ + E F SR ++ ++++D + RS+G G+V F D A+
Sbjct: 183 TVFAYQIALRATERDVYEFF-SRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
++G +P+ V + +K +L G S GA
Sbjct: 242 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGML--GPYSGGA-------------R 285
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHAL 259
++VG L ++S++DLR+ F FG V V++P + KG GFVQFA ++A A++ L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-L 344
Query: 260 NGTV-IGKQTVRLS 272
NG + I + +++S
Sbjct: 345 NGQLEIAGRAIKVS 358
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 14/180 (7%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG +A + ++ L++ F SR+ ++ A V + TG+ +G+GFVRF ++ + +A+ +
Sbjct: 8 LFVGGIAKETSEEALKQYF-SRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 146 MNGVFCSNRPMRVGVATPK-KTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
+ F +P+ V A K + Y V NG + + S + S
Sbjct: 67 TH--FILGKPVDVRKAIRKHELYQQPFSMQFLERKV----QQMNGGLREMSSNGVTSRTK 120
Query: 205 TIFVGGLDSDISDEDLRQPFLQFG---DVVSVKIPV---GKGCGFVQFADRKNAEEAIHA 258
IFVGGL S+ ++E+ + F +FG DVV + V +G GFV + + E + +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD-- 60
E + F+ G V+ A V + K TG+ G+GFV F + K L++ + + D
Sbjct: 19 EEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVR 78
Query: 61 QAFR---LNWASFSAG--ERRSEAATSDL-------------SIFVGDLAIDVTDAMLQE 102
+A R L FS ER+ + L IFVG L+ + T+ +
Sbjct: 79 KAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKS 138
Query: 103 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 162
F RF V+ D T R +G+GFV + D + + + N S++ + V A
Sbjct: 139 YF-ERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQSNFHELSDKRVEVKRAI 196
Query: 163 PKK 165
PK+
Sbjct: 197 PKE 199
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F GE+ + ++R++ TGQ G+GF+ F + +KV+++ T + N Q
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED---THVINGKQVEIKRTIP 95
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
AG +S+ + IFVG + VT+ L++ F +++ ++ +V+ D T RS+G+G
Sbjct: 96 KGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF-AKYGNVVEHQVIRDHETNRSRGFG 153
Query: 130 FVRFGDENERTRAMTEMNGV 149
FV F E +++ N +
Sbjct: 154 FVIFDSEEVVDELLSKGNMI 173
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IF+G L D T+ + + FG ++ I + ++ D +TG+ +G+GF+ F D + + + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFG-KYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + + + + + PK AGG+ S D
Sbjct: 80 THVI--NGKQVEIKRTIPKG----------------AGGNQSK-----------DIKTKK 110
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHAL 259
IFVGG+ S +++++L+ F ++G+VV ++ +G GFV F + +E +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 260 NGTVIGKQTVRL-SWG 274
N + V L WG
Sbjct: 171 NMIDMADTQVSLYKWG 186
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 43/280 (15%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F +VVS +++ N + G+ GYGFVEF S A K L+ NG + N S
Sbjct: 178 FNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHES 236
Query: 70 FSAGERRSEAATSDLSIFVGDL--AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKG 127
E EAA + ++FV +L +I ++D + F + +++++S G+ G
Sbjct: 237 PGFAE---EAAITK-TLFVANLRDSIQISDII---NFFKDVGEVVHVRLIVNSQ-GKHAG 288
Query: 128 YGFVRFGDENERTRAMTEMNGVFCSNRPMRV-GVAT-----PK-----KTYGXXXXXXXX 176
+GFV F NE +A+ + NG + N + + G T PK K +
Sbjct: 289 WGFVEFASANEAEKALVK-NGEYLHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRRES 347
Query: 177 XAVVLAGGHPSNGAVAQGSQSDGD------SNNTTIFVGGL--DSDISDEDLRQPFLQFG 228
+ G +G D + T+FV L + + + F G
Sbjct: 348 LLIKEVEG-------VEGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVG 400
Query: 229 DVVSVKIPVGK-----GCGFVQFADRKNAEEAIHALNGTV 263
++V ++I V GCGFV+F AE+A+ G +
Sbjct: 401 EIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
V N F GEVV + N+ G G+G VEF S A+K L+ F+G P + RL
Sbjct: 313 VENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE-FHG--RPLLGREIRL 369
Query: 66 NWASFSAGERRSEAATSDLS--------------IFVGDLAIDVTDAMLQETFGSRFSS- 110
+ A GER A + S IFV +++ ++ T FSS
Sbjct: 370 DIAQ-ERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSC 428
Query: 111 --IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 148
IK V ID +TG SKG ++ F + E+ E+NG
Sbjct: 429 GEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKA---LELNG 465
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG L+ D+ L++ F S F + A V+ D TGRS+G+GFV F E+ A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 146 MNGVFCSNRPMRVGVATPKKT 166
M+G + R +RV +AT + +
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG L+ D+ L++ F S F + A V+ D TGRS+G+GFV F E+ A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 146 MNGVFCSNRPMRVGVATPKKT 166
M+G + R +RV +AT + +
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 204 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 257
T++ V L D EDLR+PF QFG V + +P +G GF+QF D +A EA H
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 258 ALNGTVI 264
++G ++
Sbjct: 97 QMDGYLL 103
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 5/73 (6%)
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEEAIHAL 259
+++VGGL DI++E +R+ F +G V++VKI GK GFV F++R++A++AI +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 260 NGTVIGKQTVRLS 272
+G IG + VR++
Sbjct: 68 DGKSIGGRAVRVN 80
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 8 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAF- 63
+ F GE+ K + +K +GQS+GYGF+ F SR+ A L Q GT M A
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 64 -RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
+ A + I+V +++ D+ L E F SRF I+ + +D T
Sbjct: 206 GPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF-SRFGEIEEGPLGLDKAT 264
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVF 150
GR KG+ + +A+ E + F
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTF 292
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 8 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAF- 63
+ F GE+ K + +K +GQS+GYGF+ F SR+ A L Q GT M A
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 64 -RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
+ A + I+V +++ D+ L E F SRF I+ + +D T
Sbjct: 206 GPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF-SRFGEIEEGPLGLDKAT 264
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVF 150
GR KG+ + +A+ E + F
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTF 292
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 87 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 146
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 147 NGVFCSNRPMRVGVATPKKTYG 168
NG R + V A + + G
Sbjct: 68 NGKELDGRVITVNEAQSRGSGG 89
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 207 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 260
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 261 GTVIGKQTVRLSWGRSPGN 279
G + + + ++ +S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IFVG L+ DVT+ L+ TF R+ I ++++ +TGR +G+GF+ F D A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 146 MNGVFCSNRPMRVGVATPK 164
M+G N+ + V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 203 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAI 256
+ IFVGGL D+++ L F ++G + +I VG +G GF+ F DR+ A++AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 257 HALNGTVIGKQTV 269
++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IFVG L+ DVT+ L+ TF R+ I ++++ +TGR +G+GF+ F D A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 146 MNGVFCSNRPMRVGVATPK 164
M+G N+ + V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 203 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAI 256
+ IFVGGL D+++ L F ++G + +I VG +G GF+ F DR+ A++AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 257 HALNGTVIGKQTV 269
++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 87 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 146
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 147 NGVFCSNRPMRVGVA 161
NG R + V A
Sbjct: 68 NGKELDGRVITVNEA 82
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 207 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 260
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 261 GTVIGKQTV 269
G + + +
Sbjct: 69 GKELDGRVI 77
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 87 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 146
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 147 NGVFCSNRPMRVGVA 161
NG R + V A
Sbjct: 68 NGKELDGRVITVNEA 82
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 207 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 260
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 261 GTVIGKQTV 269
G + + +
Sbjct: 69 GKELDGRVI 77
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E V+ F+ G+V ++I ++ + +S+G G++EFY + + +G +
Sbjct: 181 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLFLGQPVM 239
Query: 63 FRLNWASFSAGERRSEAA----TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
+ + A + + S +D ++VG+L ++++ L++ F + F ++ ++ +
Sbjct: 240 VKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEA-FGPVELVQLPL 298
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNG 148
D TG+ KG+GF++F A +NG
Sbjct: 299 DPETGQCKGFGFIQFVQLEHSKAAQIALNG 328
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 104 FGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATP 163
F RF ++ ++++D + RS+G G+V F D A+ ++G +P+ V +
Sbjct: 240 FLCRFH-VRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-LSGQPLLGQPVMVKPSEA 297
Query: 164 KKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQP 223
+K +L G S GA ++VG L ++S++DLR+
Sbjct: 298 EKNLVQSTTAAAGAGGML--GPYSGGA-------------RRLYVGNLHINMSEDDLRKV 342
Query: 224 FLQFGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTV-IGKQTVRLS 272
F FG V V++P + KG GFVQFA ++A A++ LNG + I + +++S
Sbjct: 343 FESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 396
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 194 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI--PVG-------KGCGFV 244
GS DGD T ++VG L + + L + F +FG + SVKI P + CGFV
Sbjct: 169 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFV 228
Query: 245 QFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 276
F +R + + A + G ++ + +++ WG++
Sbjct: 229 SFMNRADGQAAKDEMQGIIVYEYELKIGWGKA 260
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
M N + F G V + ++IR K G++ G+ FV S A+ + F+ +
Sbjct: 106 MSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSG-- 162
Query: 61 QAFRLNWASFSAG-ERRSEAATSDL----------SIFVGDLAIDVTDAMLQETFGSRFS 109
R+ SF+ ++ + + +DL ++V +LA L+E F +
Sbjct: 163 ---RIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADF 219
Query: 110 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPM 156
+ A+VV GRS GYGFV F E A+T++NG RP+
Sbjct: 220 NPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
>AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412898-3418382 REVERSE LENGTH=947
Length = 947
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 194 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---------PVGKGCGFV 244
GS DGD T ++V L S + + L + F +FG + SVKI + CGFV
Sbjct: 177 GSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFV 236
Query: 245 QFADRKNAEEAIHALNGTVIGKQTVRLSWGR 275
F +R + E A + G ++ + +++ WG+
Sbjct: 237 AFMNRADGEAAKEKMQGIIVYEYELKIGWGK 267
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 81 TSDLSIFVGDLAIDV-TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 139
T+ +FVG LA + TD M + + +F I A ++ D NTG+SKGYGFV F + +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRR--YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 140 TRAMTEMNGV 149
TRA+ + N V
Sbjct: 72 TRAVADPNPV 81
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ T+ L E F S+ + A++V+D + RSKG+GFV F +E +A+ E
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 146 MNGVFCSNRPMRVGVATPKKTYG 168
NG + R + V A K++ G
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLG 117
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IFVG LA + ++ F +F I A V+ D NTGRSKGYGFV F + RA
Sbjct: 24 IFVGGLAWETQRDTMRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 146 MNGV 149
MN V
Sbjct: 83 MNPV 86
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 8 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNW 67
+ F G V+S +V RN QTG+S G G+V S +A+ + + +GT + + R +
Sbjct: 126 DMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYS- 184
Query: 68 ASFSAGERRSEAAT-----------SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKV 116
+ G RR+ S ++VG+L L+ F S+F +I +V
Sbjct: 185 VDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHF-SKFGTIVSTRV 243
Query: 117 VIDSNTGRSKGYGFVRFGDENERTRAMT 144
+ D TGR++ + F+ F ER A++
Sbjct: 244 LHDRKTGRNRVFAFLSFTSGEERDAALS 271
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 141 RAMTEMNGVFCSNRPMRVGVATP 163
A + NG RP+RV P
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPP 177
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 146 MNGVFCSNRPMRVGVATPKKTYG 168
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 141 RAMTEMNGVFCSNRPMRVGVATP 163
A + NG RP+RV P
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPP 177
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 146 MNGVFCSNRPMRVGVATPKKTYG 168
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 141 RAMTEMNGVFCSNRPMRVGVATP 163
A + NG RP+RV P
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPP 177
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 146 MNGVFCSNRPMRVGVATPKKTYG 168
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 14 GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAG 73
G V +V+ +K +G+S +GF S A V++ NG + + + ++
Sbjct: 100 GAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASS 159
Query: 74 ERRSEAATSD-------LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSK 126
S + D ++VG+LA VT ML+ F + + AKV T +S
Sbjct: 160 PDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEK-GKVVSAKVSRVPGTSKST 218
Query: 127 GYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 161
G+GFV F E + A+ +N + +RV A
Sbjct: 219 GFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 14 GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAG 73
G V +V+ +K +G+S +GF S A V++ NG + + + ++
Sbjct: 100 GAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASS 159
Query: 74 ERRSEAATSD-------LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSK 126
S + D ++VG+LA VT ML+ F + + AKV T +S
Sbjct: 160 PDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEK-GKVVSAKVSRVPGTSKST 218
Query: 127 GYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 161
G+GFV F E + A+ +N + +RV A
Sbjct: 219 GFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + ++ F +F I A ++ D NTG+SKGYGFV F + + T
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 141 RAMTEMNGV 149
RA+ + N V
Sbjct: 73 RAVADPNPV 81
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 69 SFSAGERRSEAATSDL-------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
S AG RS A SD+ S+ V +L+ D + L E F F ++ V ID
Sbjct: 219 SMRAGADRS-AVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHP-FGAVTRVYVAIDQK 276
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 166
TG S+G+GFV F + RA+ ++NG N +RV ATP+ T
Sbjct: 277 TGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT 321
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FV L+ TD L++ F S F IK A+++ DS T R KG+GF+ F E++ +A+
Sbjct: 9 LFVSRLSAYTTDQSLRQLF-SPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 146 MNGVFCSNRPMRVGVA 161
++G R + V VA
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 69 SFSAGERRSEAATSDL-------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
S AG RS A SD+ S+ V +L+ D + L E F F ++ V ID
Sbjct: 192 SMRAGADRS-AVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHP-FGAVTRVYVAIDQK 249
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 166
TG S+G+GFV F + RA+ ++NG N +RV ATP+ T
Sbjct: 250 TGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT 294
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 87 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 146
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 147 N 147
N
Sbjct: 68 N 68
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 207 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 260
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + L++ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHF-EQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 141 RAMTEMNGVFCSNR 154
RA + + R
Sbjct: 80 RACADPTPIIDGRR 93
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + ++ F +F I A ++ D TG+SKGYGFV F D + T
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYF-DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 141 RAMTEMNGVF 150
RA+ + N V
Sbjct: 73 RAVADPNPVI 82
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IFVG ++ + L+E F S++ + AK+++D TGRS+G+ FV F E + AM +
Sbjct: 36 IFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 146 MNGVFCSNRPMRVGVAT 162
++G R +RV AT
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ V + L++ F S F + ++ D +GRS+G+GFV F +E + A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 146 MNGVFCSNRPMRVGVATPK 164
M+G RP+R+ A +
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
F+G LA +D L++ F ++ + AKVV+D +GRS+G+GF+ F ++ A+
Sbjct: 9 CFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 146 MNGVFCSNRPMRVGVATP 163
MNG+ R + V A P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + L+ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 141 RAMTEMNGVFCSNR 154
RA + + R
Sbjct: 80 RACVDPTPIIDGRR 93
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + L+ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 141 RAMTEMNGVFCSNR 154
RA + + R
Sbjct: 80 RACVDPTPIIDGRR 93
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 8 NCFAHTGEVVSAKVI-RNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLN 66
+ F G V+S +V+ RN QTG+S G G+V S +A+ + + +GT + + R +
Sbjct: 126 DMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYS 185
Query: 67 WASFSAGERRSEAAT-----------SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAK 115
+ G RR+ S ++VG+L L+ F S+F +I +
Sbjct: 186 -VDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHF-SKFGTIVSTR 243
Query: 116 VVIDSNTGRSKGYGFVRFGDENERTRAMT 144
V+ D TGR++ + F+ F ER A++
Sbjct: 244 VLHDRKTGRNRVFAFLSFTSGEERDAALS 272
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 146 MNGVFCSNRPMRVGVATPKKTYG 168
+NG R +RV A + G
Sbjct: 339 LNGADLDGRQIRVSEAEARPPRG 361
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 10 FAHTGEVVSAKVIRNKQTGQ--SEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNW 67
G+++S +I++K+ + S GYGFVEF S TA V ++ GT++ A L +
Sbjct: 625 LVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDG--HALILRF 682
Query: 68 ASFSAGERRSEAATSD---LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGR 124
++ + + D + V ++A + T L++ F S F IK ++ N G+
Sbjct: 683 CENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLF-SPFGQIKSMRLP-KKNIGQ 740
Query: 125 SKGYGFVRF 133
GY FV F
Sbjct: 741 YAGYAFVEF 749
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNG 53
MDE+ + F GEVV +VI +++TG+S G+GFV F S A +Q +G
Sbjct: 51 MDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDG 103
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 75 RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFG 134
RR TS +FV L+ T+ LQ+ F S F + A+V+ D ++GRSKG+GFV +
Sbjct: 26 RRCSTLTSP-RLFVSGLSRLTTNEKLQDAFAS-FGQLVDARVITDRDSGRSKGFGFVTYA 83
Query: 135 DENERTRAMTEMNGVF 150
+ +A EMN F
Sbjct: 84 TIEDAEKAKAEMNAKF 99
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 64
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 65 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 117
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 118 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 150
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 64
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 65 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 117
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 118 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 150
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 64
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 65 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 117
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 118 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 150
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 64
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 65 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 117
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 118 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 150
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 64
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 65 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 117
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 118 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 150
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310