Miyakogusa Predicted Gene
- Lj4g3v0575400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0575400.1 Non Chatacterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,29.17,0.000000000001,RRM,RNA recognition motif domain; RRM_1,RNA
recognition motif domain; RNA-binding domain, RBD,NULL; ,CUFF.47618.1
(370 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 321 4e-88
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 308 5e-84
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 271 6e-73
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 270 2e-72
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 269 3e-72
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 265 3e-71
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 265 5e-71
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 263 2e-70
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 260 1e-69
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 250 1e-66
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 249 1e-66
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 5e-27
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 118 7e-27
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 113 2e-25
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 110 2e-24
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 110 2e-24
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 87 2e-17
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 84 1e-16
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 83 3e-16
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 81 1e-15
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 80 2e-15
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 80 3e-15
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 79 5e-15
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 79 5e-15
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 78 1e-14
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 75 8e-14
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 75 8e-14
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 73 3e-13
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 7e-13
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 71 2e-12
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 67 3e-11
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 4e-11
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 4e-11
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 63 4e-10
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 63 4e-10
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 63 4e-10
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 63 4e-10
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-10
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-10
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 61 1e-09
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 61 1e-09
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 60 2e-09
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 60 2e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-09
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 58 1e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 58 1e-08
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 5e-08
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 1e-07
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 1e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 54 2e-07
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 53 4e-07
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-07
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 52 9e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 9e-07
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 1e-06
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 1e-06
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 1e-06
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 51 1e-06
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 51 1e-06
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 50 2e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 50 3e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 50 3e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 4e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 49 6e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 49 6e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 49 6e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 48 1e-05
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 321 bits (823), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 180/221 (81%), Gaps = 1/221 (0%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD+++T+W+GDL HWMDE Y+H+CF+HTGEV S KVIRNK T QSEGYGFVEF SRA AE
Sbjct: 104 GDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAE 163
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+VLQN++G++MPN+DQ FR+NWASFS GE+R+ DLS+FVGDL+ DVTD +L ETF
Sbjct: 164 EVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFS 223
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
R+ S+K AKVVIDSNTGRSKGYGFVRFGDENER+RA+TEMNG +CSNR MRVG+ATPK+
Sbjct: 224 DRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
AV+LAGGH SNG++ GSQSDG+S N T+
Sbjct: 284 AIA-NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATI 323
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 33/203 (16%)
Query: 115 TIWLGDLHHWMDENYVHNCFA-HTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
++++GDL + + +H F+ V SAKV+ + TG+S+GYGFV F + L
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 174 NFNGTMMPN--------------------TDQAFRLNWASFSAGE----RRSEAATSDLS 209
NG N + QA L S G +S+ +++ +
Sbjct: 263 EMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNAT 322
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG + DV D L++ F S+F + K+ + KG GFV+F D A+
Sbjct: 323 IFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAIES 375
Query: 270 MNGVFCSNRPMRVGVA-TPKKTY 291
+NG +R+ +P K +
Sbjct: 376 LNGTVIGKNTVRLSWGRSPNKQW 398
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 175/223 (78%), Gaps = 10/223 (4%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD+++T+W+GDL HWMDE Y+H CF+HT EV S KVIRNKQT QSEGYGFVEF SR+ AE
Sbjct: 115 GDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAE 174
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+ LQ+F+G MPN +Q FRLNWASFS GE+R+ DLSIFVGDLA DV+DA+L ETF
Sbjct: 175 EALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFA 234
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
R+ S+KGAKVVIDSNTGRSKGYGFVRFGDENER+RAMTEMNG FCS+R MRVG+ATPK+
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
Query: 290 --TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
YG A+ LAGGH N GS SDG+SNN+T+
Sbjct: 295 AAAYG---QQNGSQALTLAGGHGGN-----GSMSDGESNNSTI 329
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 30/199 (15%)
Query: 115 TIWLGDLHHWMDENYVHNCFA-HTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+I++GDL + + + FA V AKV+ + TG+S+GYGFV F + +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 174 NFNGTM--------------------MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVG 213
NG N QA L G S+ +++ +IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSM-SDGESNNSTIFVG 332
Query: 214 DLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGV 273
L DVT+ L + F S F + K+ + KG GFV+F + A+ +NG
Sbjct: 333 GLDADVTEEDLMQPF-SDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNGT 385
Query: 274 FCSNRPMRVGVA-TPKKTY 291
+R+ +P K +
Sbjct: 386 VIGKNTVRLSWGRSPNKQW 404
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 162/221 (73%), Gaps = 15/221 (6%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFA--HTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
E +TIW+GDLHHWMDE Y+++ FA E+VS KVIRNK G SEGYGFVEF S A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
KVL+ FNGT MPNTDQ FRLNWASFS GE+R E DLSIFVGDL+ DV+D +L ETF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
++ S+K AKVV+D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
T G GG+ NG + ++ +GD NTTV
Sbjct: 279 TNGYQQ----------QGGYMPNGTL---TRPEGDIMNTTV 306
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/221 (61%), Positives = 162/221 (73%), Gaps = 15/221 (6%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFA--HTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
E +TIW+GDLHHWMDE Y+++ FA E+VS KVIRNK G SEGYGFVEF S A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
KVL+ FNGT MPNTDQ FRLNWASFS GE+R E DLSIFVGDL+ DV+D +L ETF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
++ S+K AKVV+D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
T G GG+ NG + ++ +GD NTT+
Sbjct: 279 TNGYQQ----------QGGYMPNGTL---TRPEGDIMNTTI 306
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHT-GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+I++GDL + +N +H F+ V +AKV+ + TG+S+GYGFV F K +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGE--------------RRSEAATSDLSIFVGDLAIDV 219
NG + +A R+ A+ R E + +IFVG L V
Sbjct: 258 EMNGVKC--SSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 220 TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRP 279
TD L++ F + F I K+ + KG GFV+F + A+ ++NG +
Sbjct: 316 TDEDLKQPF-NEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 280 MRV 282
+R+
Sbjct: 369 VRL 371
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 163/221 (73%), Gaps = 15/221 (6%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCF--AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
E +TIW+GDL +WMDE Y+++ F A E+VS KVIRNK G SEGYGFVEF S A+
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
KVLQ FNG MPNTDQ FRLNWASFS GE+R E DLSIFVGDLA DV+DA+L ETF
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
++ S+K AKVV+D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+K
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
T G GG+ +GA ++S+GD+ NTT+
Sbjct: 281 TNGYQQ----------QGGYMPSGAF---TRSEGDTINTTI 308
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 30/199 (15%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHT-GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+I++GDL + + +H F+ V +AKV+ + TG+S+GYGFV F K +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 174 NFNGTMMPNTDQAFRLNWASF--------------SAGERRSEAATSDLSIFVGDLAIDV 219
NG + +A R+ A+ S RSE T + +IFVG L V
Sbjct: 260 EMNGVKC--SSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 220 TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRP 279
TD L++ F S F I K+ + KG GFV+F + A+ ++NG +
Sbjct: 318 TDEDLKQPF-SEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 280 MRVGVA------TPKKTYG 292
+R+ P+ YG
Sbjct: 371 VRLSWGRNPANKQPRDKYG 389
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/221 (59%), Positives = 160/221 (72%), Gaps = 17/221 (7%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DEIRT+W+GDL +WMDEN+++ CFAHTGE+VSAKVIRNKQTGQ EGYGF+EF S A AE+
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 171 VLQNFNGTMMPN-TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
VLQ FN +P+ DQ FRLNWAS S+G++R + + D +IFVGDLA DVTD +L ETF
Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETFR 176
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
+ + S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEMNGV CS RPMR+G A KK
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
+ G S + A G +D D NNTTV
Sbjct: 237 G--------------VTGQRDSYQSSAAGVTTDNDPNNTTV 263
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 23/160 (14%)
Query: 115 TIWLGDLHHWMDENYVHNCF-AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
TI++GDL + + + F A V AKV+ ++ TG+++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 174 NFNGTMMPNTDQAFRLNWASFSAG------ERRSEAA--TSD-----LSIFVGDLAIDVT 220
NG +P + + R+ A+ G +S AA T+D ++FVG L VT
Sbjct: 216 EMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 221 DAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
D L+ F S++ I K+ K GFV+F ++
Sbjct: 274 DDHLKNVF-SQYGEIVHVKIPA------GKRCGFVQFSEK 306
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 132/221 (59%), Positives = 160/221 (72%), Gaps = 17/221 (7%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DEIRT+W+GDL +WMDEN+++ CFAHTGE+VSAKVIRNKQTGQ EGYGF+EF S A AE+
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 171 VLQNFNGTMMPN-TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
VLQ FN +P+ DQ FRLNWAS S+G++R + + D +IFVGDLA DVTD +L ETF
Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETFR 176
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
+ + S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEMNGV CS RPMR+G A KK
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
+ G S + A G +D D NNTTV
Sbjct: 237 G--------------VTGQRDSYQSSAAGVTTDNDPNNTTV 263
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 23/173 (13%)
Query: 115 TIWLGDLHHWMDENYVHNCF-AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
TI++GDL + + + F A V AKV+ ++ TG+++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 174 NFNGTMMPNTDQAFRLNWASFSAG------ERRSEAA--TSD-----LSIFVGDLAIDVT 220
NG +P + + R+ A+ G +S AA T+D ++FVG L VT
Sbjct: 216 EMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 221 DAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGV 273
D L+ F S++ I K+ K GFV+F +++ A+ +NGV
Sbjct: 274 DDHLKNVF-SQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGV 319
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 156/222 (70%), Gaps = 5/222 (2%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E+RT+W+GDL +W+DENY+ +CF+ TGE+VS KVIRNK TGQ EGYGF+EF S A AE+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
LQ +NGT MP T+ FRLNWASF +G++ A D SIFVGDLA DVTD +LQETF
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD--AGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+SS++GAKVV D +TGRSKGYGFV+F +E+ER RAM EMNG++CS RPMR+ ATPKK
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTVSL 332
G V A P VA + D TT+S+
Sbjct: 199 VGVQQQYVTKVTVPSAVAAPVQAYVA---PPESDVTCTTISV 237
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 116/182 (63%), Positives = 144/182 (79%), Gaps = 2/182 (1%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E+RT+W+GDL +W+DENY+ +CF+ TGE+VS KVIRNK TGQ EGYGF+EF S A AE+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
LQ +NGT MP T+ FRLNWASF +G++ A D SIFVGDLA DVTD +LQETF
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD--AGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+SS++GAKVV D +TGRSKGYGFV+F +E+ER RAM EMNG++CS RPMR+ ATPKK
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 291 YG 292
G
Sbjct: 199 VG 200
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 151/223 (67%), Gaps = 22/223 (9%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
+++++W+GDL WMDENY+ + FA +GE SAKVIRNK TGQSEGYGF+EF S + AE+V
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
LQ +NG MP+T+Q FRLNWA AGE+R + D +IFVGDLA +VTD ML +TF +
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+ S+KGAKVV+D TGRSKGYGFVRF DENE+ RAMTEMNG +CS RPMR+G A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQ----SDGDSNNTTV 330
P A+ Q +Q D D NNTT+
Sbjct: 238 ------------------PMQPAMYQNTQGANAGDNDPNNTTI 262
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHT-GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
TI++GDL + + + + F + G V AKV+ ++ TG+S+GYGFV F + +
Sbjct: 154 HTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAM 213
Query: 173 QNFNGT--------MMPNTDQ-AFRLNWASF--SAGERRSEAATSDLSIFVGDLAIDVTD 221
NG + P ++ A + A + + G + ++ +IFVG L +VTD
Sbjct: 214 TEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMR 281
L+ FG +F + K+ K GFV++ ++ A++ +NG + +R
Sbjct: 274 DELKSIFG-QFGELLHVKIPP------GKRCGFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 282 V 282
+
Sbjct: 327 L 327
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/219 (56%), Positives = 151/219 (68%), Gaps = 16/219 (7%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
EIR++W+GDL WMDENY+ N F TGE +AKVIRNKQ G SEGYGF+EF + ATAE+
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
LQ +NG MP+++QAFRLNWA AGERR +A + ++FVGDLA DVTD ML ETF +
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERR-QAEGPEHTVFVGDLAPDVTDHMLTETFKAV 196
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+SS+KGAKVV D TGRSKGYGFVRF DE+E+ RAMTEMNG +CS+RPMR G A KK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
P++ QG+ + D NTT+
Sbjct: 257 TM---------------QPASYQNTQGNSGESDPTNTTI 280
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 115 TIWLGDLHHWMDENYVHNCF-AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
T+++GDL + ++ + F A V AKV+ ++ TG+S+GYGFV F + + +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 174 NFNG---------TMMPNTDQAFRLNWASFSAGERRS-EAATSDLSIFVGDLAIDVTDAM 223
NG T + + AS+ + S E+ ++ +IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L+ FG +F + K+ K GFV++ + +A++ +NG + +R+
Sbjct: 294 LKSVFG-QFGELVHVKIPA------GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 111/191 (58%), Gaps = 10/191 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + F TG V S+K+IR ++ YGFV ++ R +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ NG + Q ++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S FS
Sbjct: 115 SLNGRHL--FGQPIKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDATLYQSF-SVFS 168
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT T G
Sbjct: 169 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
Query: 294 XXXXXXXXAVV 304
+VV
Sbjct: 229 DKLSSDGKSVV 239
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 13/215 (6%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R+++ G++H + E + FA TG + S K+IR ++ YGFV ++ R A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG + Q ++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S F+
Sbjct: 119 TLNGRHI--FGQPMKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDAALFDSF-SAFN 172
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT T+G
Sbjct: 173 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGE 232
Query: 294 XXXXXXXXAVV-LAGGHPSNGAVAQGSQSDGDSNN 327
+VV L G +G + S D NN
Sbjct: 233 DKHSSDGKSVVELTNGSSEDG--RELSNEDAPENN 265
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 17/219 (7%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R+++ G++H + E + FA TG + S K+IR ++ YGFV ++ R A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG + Q ++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S F+
Sbjct: 119 TLNGRHI--FGQPMKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDAALFDSF-SAFN 172
Query: 234 SI----KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
S + A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT
Sbjct: 173 SCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 232
Query: 290 TYGXXXXXXXXXAVV-LAGGHPSNGAVAQGSQSDGDSNN 327
T+G +VV L G +G + S D NN
Sbjct: 233 TFGEDKHSSDGKSVVELTNGSSEDG--RELSNEDAPENN 269
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 12/219 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + FA TG V S K+IR +++ YGFV ++ R +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ NG + Q ++NWA +++G+R E +S +IFVGDL+ +VTDAML F S +
Sbjct: 110 SLNGRHL--FGQPIKVNWA-YASGQR--EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYP 163
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
+ A+V+ D TGRS+G+GFV F ++ + A+ E+ G + +R +R AT T G
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
Query: 294 XXXXXXXXAVV-LAGGHPSNGA-VAQGSQSDGDSNNTTV 330
+VV L G +G G + ++ TTV
Sbjct: 224 DKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTV 262
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + FA TG V S K+IR +++ YGFV ++ R +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ NG + Q ++NWA +++G+R E +S +IFVGDL+ +VTDAML F S +
Sbjct: 110 SLNGRHL--FGQPIKVNWA-YASGQR--EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYP 163
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
+ A+V+ D TGRS+G+GFV F ++ + A+ E+ G + +R +R AT T G
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
Query: 294 XXXXXXXXAVV 304
+VV
Sbjct: 224 DKQSSDSKSVV 234
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 34/194 (17%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++GDL + + + CF+ A+V+ +++TG+S G+GFV F ++ A+ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 176 NGTMMPNTDQAFRLNWASFSA--GERRSEAATSDL------------------------S 209
G + + R NWA+ A GE + + + + +
Sbjct: 201 TGKWL--GSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTT 258
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+LA +V+ L F S GA V+ + R KG+GFVR+ E A+
Sbjct: 259 VYVGNLAPEVSQVDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQM 313
Query: 270 MN-GVFCSNRPMRV 282
N + S R M+
Sbjct: 314 GNTHSYLSGRQMKC 327
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ + + F G VV+ +V R+ T +S GYG+V F + A + +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P + R+ ++ RRS A +IF+ +L + L +TF S F +
Sbjct: 97 LN--YIPLYGKPIRVMYSHRDPSVRRSGAG----NIFIKNLDESIDHKALHDTFSS-FGN 149
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +DS +G+SKGYGFV++ +E +A+ ++NG+ +++ + VG
Sbjct: 150 IVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG 197
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 13/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L ++ + N F G++ SA V+++ + G+S+G+GFV F + A + +++
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 176 NGTMMPNTD-QAFRLNWASFSAGERR-------SEAATSDLS--IFVGDLAIDVTDAMLQ 225
NG + + R S E R EAA S ++V +L ++D L+
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
E F S F ++ +KV+ D N G SKG GFV F E T AM++++G ++P+ V +A
Sbjct: 336 EIF-SPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
Query: 286 TPKK 289
K+
Sbjct: 394 QRKE 397
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L + +D + F G V ++VI N+ T QS G+GFV + AEK ++ F
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
N + S ER+ + I+VG+L DV L+ F S +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKV 233
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
A+VV D TGRS+G+GFV+ +ENE A+ ++G R ++V VA
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L + ++ + F G V A+VI N++T QS G+GFV S AE ++ F
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 176 N-----GTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
N G ++ A R S ER ++VG+L DV + L++ F S
Sbjct: 212 NRYDLNGRLLTVNKAAPR-----GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA---TP 287
+ A+VV D TGRS+G+GFV D +E A++ ++G R +RV VA P
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
Query: 288 KKTY 291
++ Y
Sbjct: 326 RRGY 329
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
G+E R +++G+L + + + + F G VV +++ +K T +S G+GFV S A+
Sbjct: 113 GEEGR-LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAAT-----------SDLSIFVGDLAID 218
+ +Q FN + + + ++N+ G T S ++ G+L +
Sbjct: 172 EAMQMFNSSQI--GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWN 229
Query: 219 VTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNR 278
+T L++ FG + + GAKV+ + NTGRS+G+GF+ F A+ MNGV R
Sbjct: 230 LTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 279 PMRVGVATPKK 289
+R+ +A+ ++
Sbjct: 289 ALRLNLASERE 299
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
+++ GDL + E ++ + F H VVS +V R+ Q +S GY ++ F + A + ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P D+ R+ ++ R S +IF+ +L + + L ETF S F +
Sbjct: 109 LNYT--PLFDRPIRIMLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSS-FGT 161
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +D TGRSKGYGFV+F E A+ ++NG+ +++ + VG
Sbjct: 162 ILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + E+ + F G + SA V+R+ Q+G S +GFV F A ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSE-------------AATSDLSIFVGDLAIDVTDA 222
NG + D + A ER E + ++++ +L V D
Sbjct: 290 NGISL--GDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L+E F S + ++ +KV+++ G S+G+GFV + + E RA++EMNG +P+ +
Sbjct: 347 KLKEMF-SEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Query: 283 GVATPKK 289
+A K+
Sbjct: 405 ALAQRKE 411
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 92/169 (54%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDLH + E +++ FA + S ++ ++ +G+S YG+ F SR A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +++ + R+ W+ + RR+ ++FV +L VT+A+LQ+ F +F +
Sbjct: 85 KNNSLL--NGKMIRVMWSVRAPDARRNGVG----NVFVKNLPESVTNAVLQDMF-KKFGN 137
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV + G+S+GYGFV+F E+ A+ +N +++ + VG
Sbjct: 138 IVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG 185
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 13/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + E+ + FA G++VS + ++ + GY FV F + A + +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 176 NGTMM----------PNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQ 225
NGT + +L F + +I+V ++ + VT+ L+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
+ F S+ +I K++ D G+SKG+GFV F E A+ +G +P+ V +A
Sbjct: 322 KHF-SQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 286 TPKK 289
K+
Sbjct: 380 QKKE 383
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ + F G+VVS +V R+ T +S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M +A R+ ++ R+S +IF+ +L + L ETF S F
Sbjct: 106 LN--FMALNGRAIRVMYSVRDPSLRKSGVG----NIFIKNLDKSIDHKALHETF-SAFGP 158
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +D +G+SKGYGFV++ + A+ ++NG+ +++ + VG
Sbjct: 159 ILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 110 GDEIR--TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAT 167
G++++ +++ +L + + ++ F G S ++R+ + G+S+G+GFV F +
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDD 276
Query: 168 AEKVLQNFNGTMMPNTDQAFRLNWASFSAGERRSE---------AATSDLS----IFVGD 214
A + + NG D+ + + A ER +E +D S ++V +
Sbjct: 277 AARAVDALNGKTF--DDKEWFVGKAQ-KKSERETELKQKFEQSLKEAADKSQGSNLYVKN 333
Query: 215 LAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
L VTD L+E F F +I KV+ D +G S+G GFV F E TRA+TEMNG
Sbjct: 334 LDESVTDDKLREHFAP-FGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKM 391
Query: 275 CSNRPMRVGVATPKK 289
+P+ V +A K+
Sbjct: 392 IVTKPLYVALAQRKE 406
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ + F G+VVS +V R+ T +S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M +A R+ ++ R+S +IF+ +L + L ETF S F
Sbjct: 106 LN--FMALNGRAIRVMYSVRDPSLRKSGVG----NIFIKNLDKSIDHKALHETF-SAFGP 158
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +D +G+SKGYGFV++ + A+ ++NG+ +++ + VG
Sbjct: 159 ILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 110 GDEIR--TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAT 167
G++++ +++ +L + + ++ F G S ++R+ + G+S+G+GFV F +
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDD 276
Query: 168 AEKVLQNFNGTMMPNTDQAFRLNWASFSAGERRSE---------AATSDLS----IFVGD 214
A + + NG D+ + + A ER +E +D S ++V +
Sbjct: 277 AARAVDALNGKTF--DDKEWFVGKAQ-KKSERETELKQKFEQSLKEAADKSQGSNLYVKN 333
Query: 215 LAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
L VTD L+E F F +I KV+ D +G S+G GFV F E TRA+TEMNG
Sbjct: 334 LDESVTDDKLREHFAP-FGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKM 391
Query: 275 CSNRPMRVGVATPKK 289
+P+ V +A K+
Sbjct: 392 IVTKPLYVALAQRKE 406
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 7/178 (3%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
T+++G L + E + F G VV+ V +++ T + YGF+E+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M+ + R+N AS +++S ++L F+G+L DV + +L +TF +
Sbjct: 86 LN--MIKLHGKPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVI 138
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 292
K++ D +TG S+G+GF+ + A+ M G + SNR + V A K T G
Sbjct: 139 ASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKG 196
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 3/174 (1%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++ G+L + +D + +V+ N+ TGQS G+ FV + ++ N
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
+GT +A ++N+A + ++ +FVG+L+ VT L F +
Sbjct: 147 DGTEY--LGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAF-RECGDV 203
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
GA+VV D +TGRS+GYGFV + + E A+ ++G R +RV +A KK
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D ++ F+ G ++S KV + G+S+GYGFV+F TA+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 176 NGTMMPNTDQAFRLNWASFSAGER-RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
NG ++ N Q F ++ R S A S +++V +L ++TD L++TFG ++
Sbjct: 207 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGD 264
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
I A VV+ +G S+ +GFV F A+ +MNG+ + VG A K
Sbjct: 265 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKK 317
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++E+++ + F V + +V R+ T +S GY +V F + A + +++
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 118
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N P D+ R+ ++ R S ++F+ +L + + L ETF S F +
Sbjct: 119 LN--YAPIRDRPIRIMLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSS-FGT 171
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +D GRSKGYGFV+F E A+ ++NG+ +++ + VG
Sbjct: 172 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + ++ + F G++ SA V+++ Q+G S +GFV F S A ++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 176 NGTMMPNTDQAF--RLNWASFSAGERRSEAATSDLS---------IFVGDLAIDVTDAML 224
NG + D + R S E R + +S +++ +L V D L
Sbjct: 300 NGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGV 284
+E F S + ++ KV+++S G S+G+GFV + + E AM EMNG +P+ V +
Sbjct: 359 KEMF-SEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 285 ATPKK 289
A K+
Sbjct: 417 AQRKE 421
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D ++ F+ G ++S KV + G+S+GYGFV+F TA+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 176 NGTMMPNTDQAFRLNWASFSAGER-RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
NG ++ N Q F ++ R S A S +++V +L ++TD L++TFG ++
Sbjct: 207 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGD 264
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
I A VV+ +G S+ +GFV F A+ +MNG+ + VG A K
Sbjct: 265 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKK 317
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++E+++ + F V + +V R+ T +S GY +V F + A + +++
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 118
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N P D+ R+ ++ R S ++F+ +L + + L ETF S F +
Sbjct: 119 LN--YAPIRDRPIRIMLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSS-FGT 171
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +D GRSKGYGFV+F E A+ ++NG+ +++ + VG
Sbjct: 172 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + ++ + F G++ SA V+++ Q+G S +GFV F S A ++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 176 NGTMMPNTDQAF--RLNWASFSAGERRSEAATSDLS---------IFVGDLAIDVTDAML 224
NG + D + R S E R + +S +++ +L V D L
Sbjct: 300 NGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGV 284
+E F S + ++ KV+++S G S+G+GFV + + E AM EMNG +P+ V +
Sbjct: 359 KEMF-SEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 285 ATPKK 289
A K+
Sbjct: 417 AQRKE 421
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L ++ + F G + SA V+R+ G+S +GFV F + A + ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 176 NGTMMPNTDQAFRLNWASFSAGE-----RRSEAATSD-------LSIFVGDLAIDVTDAM 223
NG D+ + + A + RR E +SD L+++V +L VTD
Sbjct: 286 NGKKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
L+E F + F +I KV+ D +G SKG GFV F +E +R + EMNG +P+ V
Sbjct: 344 LRELF-AEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 401
Query: 284 VATPKK 289
+A K+
Sbjct: 402 LAQRKE 407
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ +++ F +VVS +V R+ T S GYG+V + + AEK +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + + R+ ++S + RRS ++FV +L V + L E F S +
Sbjct: 107 LNYSYL--NGKMIRITYSSRDSSARRSGVG----NLFVKNLDKSVDNKTLHEAF-SGCGT 159
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV D + G+S+GYGFV+F E+ A+ ++NG +++ + VG
Sbjct: 160 IVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D + F G V +VI +K TG+S G+GFV S + E Q F
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 176 NGTMMPNTDQAFRLNWAS--------FSAGERRSEAATSDLS-------------IFVGD 214
NG + + R+N FS G R S ++ ++VG+
Sbjct: 153 NGYEL--DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210
Query: 215 LAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV + E A+ ++G
Sbjct: 211 LSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 275 CSNRPMRVGVA---TPKKTY 291
R +RV A P++ Y
Sbjct: 270 LDGRQIRVSEAEARPPRRQY 289
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 200 RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGD 259
+ ++ ++DL +FVG+L +V A L + F S +++ +V+ D TGRS+G+GFV
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 260 ENERTRAMTEMNGVFCSNRPMRV--GVATPKKTYG 292
+E A + NG RP+RV G PK+ G
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDG 176
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 5/175 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G LH + F GE+ + ++R++ TGQ G+GF+ F + +KV+++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
T + N Q AG +S+ + IFVG + VT+ L++ F +++ ++
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF-AKYGNV 135
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+V+ D T RS+G+GFV F E +++ N + ++ + + A PKK+
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKS 190
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 201 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
SE +D +F GDL +V D +L + F +RF + AKV+ D TG++KGYGFV F +
Sbjct: 130 SEWPENDYRLFCGDLGNEVNDDVLSKAF-ARFPTFNMAKVIRDKRTGKTKGYGFVSFLNP 188
Query: 261 NERTRAMTEMNGVFCSNRPMRV 282
+ A+ EMNG + NRP+++
Sbjct: 189 ADLAAALKEMNGKYVGNRPIKL 210
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D + + F+ G+V+S KV R+ +G S+GYGFV+FYS +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 176 NGTMMPNTDQAFRLNWASF-SAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NGT++ N ++ F S G+ +S T +++V +L TDA L+ FG F
Sbjct: 92 NGTLIRNQ----HIHVCPFVSRGQWDKSRVFT---NVYVKNLVETATDADLKRLFGE-FG 143
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
I A VV+ G+S+ +GFV F A+ +MNGV + + VG A K
Sbjct: 144 EITSA-VVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK 197
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 134 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 193
F GE+ SA V+++ + G+S +GFV F A ++ NG ++ ++ + A
Sbjct: 139 FGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVV--DEKELHVGRAQ 195
Query: 194 FSAGERRSEAATSDL-------------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKV 240
A +L +++V +L V + L+E F S F +I KV
Sbjct: 196 RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELF-SEFGTITSCKV 254
Query: 241 VIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
++ SN G SKG GFV F E ++AM +MNG N+P+ V +A K+ +
Sbjct: 255 MVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQH 304
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G L F GE+ + ++++++TGQ G+GFV + + +KV+Q+
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
+ + + + S S+ + +++ IFVG + V D +E F +F +
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKK------IFVGGIPSSVDDDEFKEFF-MQFGEL 156
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
K +++ D +TGRS+G+GFV + E+ + + N + S + + A PKK
Sbjct: 157 KEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + ++ +H F+ G V S V+R+ G+S G+GFV F + A+K +++
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS-------------IFVGDLAIDVTDA 222
G + + +L + R E S ++V +L+ + +
Sbjct: 263 CGLQLGSK----KLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNET 318
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L+E FG + I AKV+ N GRSKG+GFV F + E +A +NG +P+ V
Sbjct: 319 RLREIFGC-YGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 283 GVATPKK 289
VA K+
Sbjct: 377 RVAERKE 383
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + + + F G ++S KV+ ++ GQS+G+GFV+F + +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 176 NGTMMPNTDQAFRLNWASF-SAGERRSEAATSD-LSIFVGDLAIDVTDAMLQETFGSRFS 233
+G+M+ +L A F + ER + A D +++V +L VTD L F S++
Sbjct: 172 HGSMVYGK----KLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-SQYG 226
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
++ VV+ GRS+G+GFV F + +AM + G+ ++ + VG A K
Sbjct: 227 TVSSV-VVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKK 280
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + E + + F+ VVS + RN TG+S Y ++ F S +A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + +A R+ W+ RR T +++V +L +T + L+ F F S
Sbjct: 82 LNHSDL--KGKAMRIMWSQRDLAYRR-RTRTGFANLYVKNLDSSITSSCLERMFCP-FGS 137
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
I KVV ++ G+SKG+GFV+F E A + ++G
Sbjct: 138 ILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHG 173
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + F G++V A ++R++ TG++ G+GF+ F + AE+V
Sbjct: 10 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 69
Query: 172 LQNFN---------GTMMPNTDQ------AFRLNWASFSAGERRSEAATSDLSIFVGDLA 216
+ + + +P DQ A ++ S S G A T IFVG L
Sbjct: 70 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK--KIFVGGLP 127
Query: 217 IDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE----RTRAMTEMNG 272
+T+A + F +F +I V+ D NT R +G+GF+ F E + E+NG
Sbjct: 128 SSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNG 186
Query: 273 VFCSNR---PMRVGVATPKKT 290
+ P + TP ++
Sbjct: 187 KMVEVKRAVPKELSSTTPNRS 207
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + F G++V A ++R++ TG++ G+GF+ F + AE+V
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 172 LQNFN---------GTMMPNTDQ------AFRLNWASFSAGERRSEAATSDLSIFVGDLA 216
+ + + +P DQ A ++ S S G A T IFVG L
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK--KIFVGGLP 130
Query: 217 IDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE----RTRAMTEMNG 272
+T+A + F +F +I V+ D NT R +G+GF+ F E + E+NG
Sbjct: 131 SSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNG 189
Query: 273 VFCSNR---PMRVGVATPKKT 290
+ P + TP ++
Sbjct: 190 KMVEVKRAVPKELSSTTPNRS 210
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G LH + F GE+ + ++R++ TGQ G+GF+ F + +KV+++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
T + N Q AG +S+ + IFVG + VT+ L++ F +++ ++
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF-AKYGNV 135
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDE 260
+V+ D T RS+G+GFV F E
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSE 160
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + DEN + F++ GEV+ V+R K TG+ G+GFV F A ++VLQ+
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 176 N---------GTMMPNTDQAFRLNWASFSAGER-RSEAATSDLSIFVGDLAIDVTDAMLQ 225
+ M +Q+ +F+A S A IFVG L +T +
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
F + + A ++ID T R +G+GFV F E+
Sbjct: 128 AYF-ETYGPVSDAVIMIDQTTQRPRGFGFVSFDSED 162
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + E+ + + F GEV+ A +++++ TG++ G+GFV F AE+V+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGE---RRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+G ++ R + F+ + S ++ IFVG LA VT+A ++ F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF- 126
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVA 285
++F I V+ D T R +G+GF+ + E + + E+NG + + V +A
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG-----KMVEVKLA 181
Query: 286 TPK 288
PK
Sbjct: 182 VPK 184
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + E+ + + F GEV+ A +++++ TG++ G+GFV F AE+V+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGE---RRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+G ++ R + F+ + S ++ IFVG LA VT+A ++ F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF- 126
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVA 285
++F I V+ D T R +G+GF+ + E + + E+NG + + V +A
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG-----KMVEVKLA 181
Query: 286 TPK 288
PK
Sbjct: 182 VPK 184
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 132 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNW 191
N F GEVV + ++ ++ TG G+GFV F A AEKVL+ + D+ L
Sbjct: 84 NYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVI----DDRKVDLK- 138
Query: 192 ASFSAGERRSE--AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 249
+ G++ ++ A + IFVG L + + L+ F + I +++ D +TGRS
Sbjct: 139 RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF-CVYGDIIEHQIMYDHHTGRS 197
Query: 250 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+G+GFV F E+ R ++ ++ + + A PK+T
Sbjct: 198 RGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRT 238
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKK------IFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKK------IFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + +E + F+ GEV+ A +++++ TG++ G+GFV F A AE V+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 173 QNFNGTM------MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
N +G + +P DQ +N ++ S+ + IFVG L VT++ +
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNG 272
F +F + V+ D NT R +G+GF+ + E + + E+NG
Sbjct: 127 YF-EQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG 175
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + +E + F+ GEV+ A +++++ TG++ G+GFV F A AE V+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 173 QNFNGTM------MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
N +G + +P DQ +N ++ S+ + IFVG L VT++ +
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNG 272
F +F + V+ D NT R +G+GF+ + E + + E+NG
Sbjct: 127 YF-EQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG 175
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F G V+ +I++K+TGQ +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 176 -NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P ++ +A GE R T + +FVG L T+ ++E F +F
Sbjct: 182 HNQITLPGGTGPVQVRYAD---GE-RERIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 236
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 289
++ ++ D +S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 237 VEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F G V+ +I++K+TGQ +G FV++ + A++ ++
Sbjct: 47 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 106
Query: 176 -NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P ++ +A GER T + +FVG L T+ ++E F +F
Sbjct: 107 HNQITLPGGTGPVQVRYAD---GERE-RIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 161
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 289
++ ++ D +S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 162 VEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 218
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F G V+ +I++K+TGQ +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 176 -NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P ++ +A GER T + +FVG L T+ ++E F +F
Sbjct: 182 HNQITLPGGTGPVQVRYAD---GERE-RIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 236
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 289
++ ++ D +S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 237 VEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T++ +L ++ V N F GEVV + N+ G G+G VEF S A+K L+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS--------------IFVGDLAIDV 219
F+G P + RL+ A GER A + S IFV +
Sbjct: 357 -FHG--RPLLGREIRLDIAQ-ERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASL 412
Query: 220 TDAMLQETFGSRFSS---IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
++ ++ T FSS IK V ID +TG SKG ++ F + E+ E+NG
Sbjct: 413 SEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKA---LELNG 465
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 203 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 262
AA IFVG L+ +VTD L+ F SRF I +++++ +TGRS+G+GF+ F D
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
Query: 263 RTRAMTEMNGVFCSNRPMRVGVATPK 288
++ EM+G +R + V A PK
Sbjct: 61 MDESIREMHGRDFGDRVISVNRAEPK 86
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + DE+ + F + GEV A V+R+K TG+ G+GFV F + ++VLQ
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 176 NGTMMPNTD--------------QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTD 221
+ D + LN + S G +A IFVG L +TD
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGG----DAYNKTKKIFVGGLPPTLTD 123
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
++ F + + ++ D T R +G+GFV F E+
Sbjct: 124 EEFRQYF-EVYGPVTDVAIMYDQATNRPRGFGFVSFDSED 162
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 8/179 (4%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G++ + + G V +V+ +K +G+S +GF S A V++
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSD-------LSIFVGDLAIDVTDAMLQE 226
NG + + + ++ S + D ++VG+LA VT ML+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
F + + AKV T +S G+GFV F E + A+ +N + +RV A
Sbjct: 196 LFSEK-GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 8/179 (4%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G++ + + G V +V+ +K +G+S +GF S A V++
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSD-------LSIFVGDLAIDVTDAMLQE 226
NG + + + ++ S + D ++VG+LA VT ML+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
F + + AKV T +S G+GFV F E + A+ +N + +RV A
Sbjct: 196 LFSEK-GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG L+ D+ L++ F S F + A V+ D TGRS+G+GFV F E+ A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV +AT + +
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG L+ D+ L++ F S F + A V+ D TGRS+G+GFV F E+ A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV +AT + +
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++ +L M N + F G V + ++IR K G++ G+ FV S A+ +
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAID 153
Query: 174 NFNGTMMPNTDQAFRLNWASFSAG-ERRSEAATSDL----------SIFVGDLAIDVTDA 222
F+ + + R+ SF+ ++ + + +DL ++V +LA
Sbjct: 154 KFDTFQV-----SGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARST 208
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPM 280
L+E F + + A+VV GRS GYGFV F E A+T++NG RP+
Sbjct: 209 HLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 NGVFCSNRPMRVGVATPKKTYG 292
NG R + V A + + G
Sbjct: 68 NGKELDGRVITVNEAQSRGSGG 89
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 132 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAF- 187
+ F GE+ K + +K +GQS+GYGF+ F SR+ A L Q GT M A
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 188 -RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 246
+ A + I+V +++ D+ L E F SRF I+ + +D T
Sbjct: 206 GPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF-SRFGEIEEGPLGLDKAT 264
Query: 247 GRSKGYGFVRFGDENERTRAMTEMNGVF 274
GR KG+ + +A+ E + F
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTF 292
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 132 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAF- 187
+ F GE+ K + +K +GQS+GYGF+ F SR+ A L Q GT M A
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 188 -RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 246
+ A + I+V +++ D+ L E F SRF I+ + +D T
Sbjct: 206 GPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF-SRFGEIEEGPLGLDKAT 264
Query: 247 GRSKGYGFVRFGDENERTRAMTEMNGVF 274
GR KG+ + +A+ E + F
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTF 292
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L+ DVT+ L+ TF R+ I ++++ +TGR +G+GF+ F D A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G N+ + V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L+ DVT+ L+ TF R+ I ++++ +TGR +G+GF+ F D A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G N+ + V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ ++ D + + F G V+S +V RN QTG+S G G+V S +A+ + +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAA-----------TSDLSIFVGDLAIDVTDAML 224
+GT + + R + + G RR+ S ++VG+L L
Sbjct: 170 DGTEVGGREMRVRYS-VDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
+ F S+F +I +V+ D TGR++ + F+ F ER A++
Sbjct: 229 RNHF-SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + + MDE+ + F GEVV +VI +++TG+S G+GFV F S A +Q
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 176 NG 177
+G
Sbjct: 102 DG 103
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 129 YVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFR 188
++ F +VVS +++ N + G+ GYGFVEF S A K L+ NG + N
Sbjct: 173 HIKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLM 231
Query: 189 LNWASFSAGERRSEAATSDLSIFVGDL--AIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 246
S E EAA + ++FV +L +I ++D + F + +++++S
Sbjct: 232 KGHESPGFAE---EAAITK-TLFVANLRDSIQISDII---NFFKDVGEVVHVRLIVNSQ- 283
Query: 247 GRSKGYGFVRFGDENERTRAMTEMNGVFCSN 277
G+ G+GFV F NE +A+ + NG + N
Sbjct: 284 GKHAGWGFVEFASANEAEKALVK-NGEYLHN 313
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSE----AATSDLSIFVGDLAIDVTDAMLQETFG 229
+G + + + A + + S +D ++VG+L ++++ L++ F
Sbjct: 228 -LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFE 286
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
+ F ++ ++ +D TG+ KG+GF++F A +NG
Sbjct: 287 A-FGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNG 328
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 205 TSDLSIFVGDLAIDV-TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
T+ +FVG LA + TD M + + +F I A ++ D NTG+SKGYGFV F + +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRR--YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 264 TRAMTEMNGV 273
TRA+ + N V
Sbjct: 72 TRAVADPNPV 81
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A ++ D NTG+SKGYGFV F + + T
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 265 RAMTEMNGV 273
RA+ + N V
Sbjct: 73 RAVADPNPV 81
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG LA + ++ F +F I A V+ D NTGRSKGYGFV F + RA
Sbjct: 24 IFVGGLAWETQRDTMRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 270 MNGVFCSNR 278
MN V R
Sbjct: 83 MNPVIDGRR 91
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ T+ L E F S+ + A++V+D + RSKG+GFV F +E +A+ E
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
NG + R + V A K++ G
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLG 117
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVI-RNKQTGQSEGYGFVEFYSRATAEKVLQN 174
+++ ++ D + + F G V+S +V+ RN QTG+S G G+V S +A+ + +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAA-----------TSDLSIFVGDLAIDVTDAM 223
+GT + + R + + G RR+ S ++VG+L
Sbjct: 170 LDGTEVGGREMRVRYS-VDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
L+ F S+F +I +V+ D TGR++ + F+ F ER A++
Sbjct: 229 LRNHF-SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 272
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN- 174
+++G + M E+ + F V +I++K T S G F+ SR A+K++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P + ++ +A E + +FVG L +V++A +Q F S++ +
Sbjct: 80 HNKKTLPGANSLLQVKYAD-------GELERLEHKLFVGMLPKNVSEAEVQSLF-SKYGT 131
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
IK +++ + SKG F+++ + + AM +NG
Sbjct: 132 IKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 N 271
N
Sbjct: 68 N 68
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L++ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHF-EQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 265 RAMTEMNGVFCSNR 278
RA + + R
Sbjct: 80 RACADPTPIIDGRR 93
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 265 RAMTEMNGVFCSNRPMRV--GVATPKK 289
A + NG RP+RV G PK+
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPPPPKR 181
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D+ + N F G+VV A+VI ++ +G+S+G+GFV S +K + +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 176 NGT 178
NG
Sbjct: 319 NGA 321
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 265 RAMTEMNGVFCSNRPMRV--GVATPKK 289
A + NG RP+RV G PK+
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPPPPKR 181
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D+ + N F G+VV A+VI ++ +G+S+G+GFV S +K + +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 176 NGT 178
NG
Sbjct: 319 NGA 321
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 265 RAMTEMNGVFCSNRPMRV--GVATPKK 289
A + NG RP+RV G PK+
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPPPPKR 181
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D+ + N F G+VV A+VI ++ +G+S+G+GFV S +K + +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 176 NGT 178
NG
Sbjct: 319 NGA 321
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN- 174
+++G + M E+ + F V +I++K T S G F+ SR A+K++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P + ++ +A E + +FVG L +V++A +Q F S++ +
Sbjct: 80 HNKKTLPGANSLLQVKYAD-------GELERLEHKLFVGMLPKNVSEAEVQSLF-SKYGT 131
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
IK +++ + SKG F+++ + + AM +NG
Sbjct: 132 IKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F+ G V+ A V + K TG+ G+GFV F + K L++
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 176 NGTMMPNTD--QAFR---LNWASFSAG--ERRSEAATSDL-------------SIFVGDL 215
+ + D +A R L FS ER+ + L IFVG L
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGL 127
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC 275
+ + T+ + F RF V+ D T R +G+GFV + D + + + N
Sbjct: 128 SSNTTEEEFKSYF-ERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQSNFHEL 185
Query: 276 SNRPMRVGVATPKK 289
S++ + V A PK+
Sbjct: 186 SDKRVEVKRAIPKE 199
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A ++ D TG+SKGYGFV F D + T
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYF-DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 265 RAMTEMNGV 273
RA+ + N V
Sbjct: 73 RAVADPNPV 81
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ V + L++ F S F + ++ D +GRS+G+GFV F +E + A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G RP+R+ A +
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FV L+ TD L++ F S F IK A+++ DS T R KG+GF+ F E++ +A+
Sbjct: 9 LFVSRLSAYTTDQSLRQLF-SPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 270 MNGVFCSNRPMRVGVA 285
++G R + V VA
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L+ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 265 RAMTEMNGVFCSNR 278
RA + + R
Sbjct: 80 RACVDPTPIIDGRR 93
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L+ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 265 RAMTEMNGVFCSNR 278
RA + + R
Sbjct: 80 RACVDPTPIIDGRR 93
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 193 SFSAGERRSEAATSDL-------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 245
S AG RS A SD+ S+ V +L+ D + L E F F ++ V ID
Sbjct: 219 SMRAGADRS-AVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHP-FGAVTRVYVAIDQK 276
Query: 246 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
TG S+G+GFV F + RA+ ++NG N +RV ATP+ T
Sbjct: 277 TGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT 321
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 192 ASFSAGERRSEAATSDL-------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 244
S AG RS A SD+ S+ V +L+ D + L E F F ++ V ID
Sbjct: 191 PSMRAGADRS-AVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHP-FGAVTRVYVAIDQ 248
Query: 245 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
TG S+G+GFV F + RA+ ++NG N +RV ATP+ T
Sbjct: 249 KTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT 294
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
+NG R +RV A + G
Sbjct: 339 LNGADLDGRQIRVSEAEARPPRG 361
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D+ + N F G+VV A+VI ++ +G+S+G+GFV S +K + +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 176 NGT 178
NG
Sbjct: 340 NGA 342
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG ++ + L+E F S++ + AK+++D TGRS+G+ FV F E + AM +
Sbjct: 36 IFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 270 MNGVFCSNRPMRVGVAT 286
++G R +RV AT
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++++ + N F+ GE+V AKVI+++ TG S+GYGFV++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 176 NG 177
NG
Sbjct: 542 NG 543
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++++ + N F+ GE+V AKVI+++ TG S+GYGFV++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 176 NG 177
NG
Sbjct: 542 NG 543
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++++ + N F+ GE+V AKVI+++ TG S+GYGFV++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 176 NG 177
NG
Sbjct: 542 NG 543
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 199 RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFG 258
RR TS +FV L+ T+ LQ+ F S F + A+V+ D ++GRSKG+GFV +
Sbjct: 26 RRCSTLTSP-RLFVSGLSRLTTNEKLQDAFAS-FGQLVDARVITDRDSGRSKGFGFVTYA 83
Query: 259 DENERTRAMTEMNGVF 274
+ +A EMN F
Sbjct: 84 TIEDAEKAKAEMNAKF 99
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 138 GEVVSAKVIRNKQTGQ--SEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFS 195
G+++S +I++K+ + S GYGFVEF S TA V ++ GT++ A L +
Sbjct: 629 GKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDG--HALILRFCENK 686
Query: 196 AGERRSEAATSD---LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGY 252
++ + + D + V ++A + T L++ F S F IK ++ N G+ GY
Sbjct: 687 RSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLF-SPFGQIKSMRLP-KKNIGQYAGY 744
Query: 253 GFVRF 257
FV F
Sbjct: 745 AFVEF 749