Miyakogusa Predicted Gene

Lj4g3v0575060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0575060.1 Non Chatacterized Hit- tr|I0YM07|I0YM07_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,35.88,1e-17,coiled-coil,NULL; ZF_MATRIN,Zinc finger, C2H2-type
matrin; U1-like zinc finger,Zinc finger, U1-type;,CUFF.47596.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49590.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...   170   3e-43
AT1G49590.2 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...   118   1e-27
AT1G49590.3 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...   117   1e-27

>AT1G49590.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr1:18354997-18356409 FORWARD LENGTH=242
          Length = 242

 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 104/135 (77%), Gaps = 3/135 (2%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGTRHKDNVAKRLAAMRKENTAKEKEHKE 60
           MTEYWVSQGNKWC+FCKI+I NNP+SIRNH+LG RH++ V K+L  MR+ + AK+KE K+
Sbjct: 1   MTEYWVSQGNKWCEFCKIWIQNNPTSIRNHDLGKRHRECVDKKLTDMRERSAAKDKELKK 60

Query: 61  TAQALEQIEAKAQRSYQKDKA---KLEEAREWHELDAEEWDFESSSGYYYHKTNGFYYDP 117
             + L+QIEAKA RSYQKD A   ++ +A    E    +W  +S+SGYYY++TNG +YD 
Sbjct: 61  NEKLLQQIEAKATRSYQKDIATAQQVAKANGAPEDGTSDWMLDSASGYYYNQTNGLHYDS 120

Query: 118 KSGFYYSDAIGKWVT 132
           +SGFYYSD+IG WVT
Sbjct: 121 QSGFYYSDSIGHWVT 135


>AT1G49590.2 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
          protein | chr1:18354997-18355975 FORWARD LENGTH=146
          Length = 146

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1  MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGTRHKDNVAKRLAAMRKENTAKEKEHKE 60
          MTEYWVSQGNKWC+FCKI+I NNP+SIRNH+LG RH++ V K+L  MR+ + AK+KE K+
Sbjct: 1  MTEYWVSQGNKWCEFCKIWIQNNPTSIRNHDLGKRHRECVDKKLTDMRERSAAKDKELKK 60

Query: 61 TAQALEQIEAKAQRSYQKDKAKLEEA 86
            + L+QIEAKA RSYQKD A  ++ 
Sbjct: 61 NEKLLQQIEAKATRSYQKDIATAQQV 86


>AT1G49590.3 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
          protein | chr1:18354997-18355679 FORWARD LENGTH=122
          Length = 122

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1  MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGTRHKDNVAKRLAAMRKENTAKEKEHKE 60
          MTEYWVSQGNKWC+FCKI+I NNP+SIRNH+LG RH++ V K+L  MR+ + AK+KE K+
Sbjct: 1  MTEYWVSQGNKWCEFCKIWIQNNPTSIRNHDLGKRHRECVDKKLTDMRERSAAKDKELKK 60

Query: 61 TAQALEQIEAKAQRSYQKDKAKLEEA 86
            + L+QIEAKA RSYQKD A  ++ 
Sbjct: 61 NEKLLQQIEAKATRSYQKDIATAQQV 86