Miyakogusa Predicted Gene

Lj4g3v0573940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0573940.1 CUFF.47585.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19090.1 | Symbols:  | RNA-binding protein | chr3:6601466-660...   293   7e-80
AT5G46250.1 | Symbols:  | RNA-binding protein | chr5:18755388-18...   152   2e-37
AT5G46250.3 | Symbols:  | RNA-binding protein | chr5:18755388-18...   113   1e-25
AT5G46250.2 | Symbols:  | RNA-binding protein | chr5:18755388-18...   112   3e-25

>AT3G19090.1 | Symbols:  | RNA-binding protein |
           chr3:6601466-6603709 FORWARD LENGTH=455
          Length = 455

 Score =  293 bits (751), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 165/294 (56%), Positives = 204/294 (69%), Gaps = 22/294 (7%)

Query: 1   MSLLANESFQKQMHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXX 60
           MSLLANES  K + KDPEGYVP++ IASTKK+K+L SN HL++ ALR+            
Sbjct: 159 MSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKK 218

Query: 61  XXRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP 120
             R   FTD+++E+LQ RTVVAENLPDDHS+QNL+KIF VVG+VK IRICHP E NSSRP
Sbjct: 219 VKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRP 278

Query: 121 KCEFLISNKLHALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKSRKSDF 180
           K +FL+SNK+HAL+EY+   IA+KAVEKLNDERNWRKG+RVRLLLRCSPKSVLK+R+ +F
Sbjct: 279 KGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNRR-NF 337

Query: 181 DGYLDDEEILNSEATEDSS--HPNNTELSDNVDENSAGSKKGWA-----------RGHGK 227
           DG L D+E+ + E+ EDS   H   ++L ++ D+N+ G    W            R +  
Sbjct: 338 DGILIDDELPSYESGEDSPRLHLTESQLDNDGDDNNVGGL--WGKGRGKGRGRSPRSYAV 395

Query: 228 GRGRTQNHTGRGL-LAPPSQTSNHVPCEVSTIKI-TKGPRMPDGTRGFAMGRGK 279
           G G      G G+ L  PS  S+    E S+ K  TKGPRMPDGTRGF MGRGK
Sbjct: 396 GGGGRSFGIGLGVSLGIPSLGSH----ESSSPKTATKGPRMPDGTRGFTMGRGK 445


>AT5G46250.1 | Symbols:  | RNA-binding protein |
           chr5:18755388-18758056 FORWARD LENGTH=422
          Length = 422

 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/285 (36%), Positives = 150/285 (52%), Gaps = 24/285 (8%)

Query: 13  MHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXXXXRKHPFTDKEK 72
           M ++ +G+VPI+ IA+  K+K L  +  L+  AL+               R  P    E 
Sbjct: 130 MKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLP--EI 187

Query: 73  EDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQ--EPNSSRPKCEFLISNKL 130
            D +  TV+ ENLP+DHS++N+++IF   GS+K++ IC P   E +    K E  I  +L
Sbjct: 188 RDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRL 247

Query: 131 HALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVLK-------SRKSDFDGY 183
           HA VEYET + AEKA   LN+E++WR G+RV+LL + + K   +        ++ D  G 
Sbjct: 248 HAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGR 307

Query: 184 LDDEEILNSEATEDSSHPNNTEL--SDNVDENSAGS---KKGWARGHGKGRGRTQNHTGR 238
           + D+     E  + +    N  L  SDN  ++  G+    K   +G   G+GR QNH G 
Sbjct: 308 VHDQ--TGGEKNKKTREHQNHRLHHSDNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGG 365

Query: 239 GLL----APPSQTSNHVPCEVSTIKITKGPRMPDGTRGFAMGRGK 279
             +    A  S   N+ P EVS  K   GPRMPDGTRGF MGRGK
Sbjct: 366 NGIGHGTASSSSHPNYHPVEVS--KRPPGPRMPDGTRGFTMGRGK 408


>AT5G46250.3 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 13  MHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXXXXRKHPFTDKEK 72
           M ++ +G+VPI+ IA+  K+K L  +  L+  AL+               R  P    E 
Sbjct: 130 MKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLP--EI 187

Query: 73  EDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP--KCEFLISNKL 130
            D +  TV+ ENLP+DHS++N+++IF   GS+K++ IC P     S    K E  I  +L
Sbjct: 188 RDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRL 247

Query: 131 HALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPK 170
           HA VEYET + AEKAV  LN+E++WR G+RV+LL + + K
Sbjct: 248 HAFVEYETVEAAEKAVTTLNNEQDWRNGLRVKLLEQAAGK 287


>AT5G46250.2 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 4/160 (2%)

Query: 13  MHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXXXXRKHPFTDKEK 72
           M ++ +G+VPI+ IA+  K+K L  +  L+  AL+               R  P    E 
Sbjct: 130 MKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLP--EI 187

Query: 73  EDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP--KCEFLISNKL 130
            D +  TV+ ENLP+DHS++N+++IF   GS+K++ IC P     S    K E  I  +L
Sbjct: 188 RDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRL 247

Query: 131 HALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPK 170
           HA VEYET + AEKA   LN+E++WR G+RV+LL + + K
Sbjct: 248 HAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGK 287