Miyakogusa Predicted Gene

Lj4g3v0536640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0536640.1 Non Chatacterized Hit- tr|D8R372|D8R372_SELML
Putative uncharacterized protein OS=Selaginella moelle,30.9,4e-18,
,CUFF.47576.1
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15890.1 | Symbols: MEE14 | maternal effect embryo arrest 14 ...   195   2e-50
AT2G15890.2 | Symbols: MEE14 | maternal effect embryo arrest 14 ...   162   2e-40

>AT2G15890.1 | Symbols: MEE14 | maternal effect embryo arrest 14 |
           chr2:6921196-6921978 REVERSE LENGTH=203
          Length = 203

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 131/176 (74%), Gaps = 11/176 (6%)

Query: 65  TICCSSSRNDPYIPKLEPFSRSKSERAAKDPPLIEKSEKELLDYCSAVEGEESYSCWQAY 124
            + CSS+R+   +PKLE FSR K +R  +DPPLIEK+E EL DYCS +EG++SYSCW+AY
Sbjct: 34  VVRCSSTRD---VPKLELFSRGKFDRILQDPPLIEKAESELSDYCSTLEGDDSYSCWRAY 90

Query: 125 FELKDLEKESPKSDIERLILETGGVKSLVGVLHGIALMHK--LKKEGLNFAKEVKSEEE- 181
           FELKDLE+E PK ++E LIL+TGG+KSL+G LHG+A M K    K GL+  +E   E+  
Sbjct: 91  FELKDLEREKPKVEVENLILQTGGLKSLIGCLHGVASMEKDNKTKNGLHVGEESDREKGM 150

Query: 182 --HIHNCPIPDGLPKSADEMMEEEQGRMPDSPYTRLLRTMGRFPAWYSQAPDHETD 235
             HIH   IPDGLPKS  E+ EEE+ +MPDS +TRLLR+ G  PAW+S APDHETD
Sbjct: 151 NLHIH---IPDGLPKSEQELEEEEKSKMPDSAFTRLLRSKGTIPAWFSHAPDHETD 203


>AT2G15890.2 | Symbols: MEE14 | maternal effect embryo arrest 14 |
           chr2:6921196-6921978 REVERSE LENGTH=175
          Length = 175

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 115/171 (67%), Gaps = 29/171 (16%)

Query: 65  TICCSSSRNDPYIPKLEPFSRSKSERAAKDPPLIEKSEKELLDYCSAVEGEESYSCWQAY 124
            + CSS+R+   +PKLE FSR K +R  +DPPLIEK+E EL DYCS +EG++SYSCW+AY
Sbjct: 34  VVRCSSTRD---VPKLELFSRGKFDRILQDPPLIEKAESELSDYCSTLEGDDSYSCWRAY 90

Query: 125 FELKDLEKESPKSDIERLILETGGVKSLVGVLHGIALMHKLKKEGLNFAKEVKSEEEHIH 184
           FELKDLE+E PK ++E LIL+TG                  +++G+N          HIH
Sbjct: 91  FELKDLEREKPKVEVENLILQTGEESD--------------REKGMNL---------HIH 127

Query: 185 NCPIPDGLPKSADEMMEEEQGRMPDSPYTRLLRTMGRFPAWYSQAPDHETD 235
              IPDGLPKS  E+ EEE+ +MPDS +TRLLR+ G  PAW+S APDHETD
Sbjct: 128 ---IPDGLPKSEQELEEEEKSKMPDSAFTRLLRSKGTIPAWFSHAPDHETD 175