Miyakogusa Predicted Gene

Lj4g3v0523550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0523550.1 Non Chatacterized Hit- tr|A5BRP5|A5BRP5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80.95,0.000000000002,5'-3' exonuclease,5'-3' exonuclease,
N-terminal; Helix-hairpin-helix class 2 (Pol1 family)
mo,Helix-,CUFF.47566.1
         (430 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52050.1 | Symbols:  | 5'-3' exonuclease family protein | chr...   535   e-152
AT3G52050.2 | Symbols:  | 5'-3' exonuclease family protein | chr...   535   e-152
AT3G52050.3 | Symbols:  | 5'-3' exonuclease family protein | chr...   534   e-152
AT3G52050.4 | Symbols:  | 5'-3' exonuclease family protein | chr...   518   e-147
AT3G52050.5 | Symbols:  | 5'-3' exonuclease family protein | chr...   395   e-110
AT1G34380.2 | Symbols:  | 5'-3' exonuclease family protein | chr...    76   5e-14
AT1G34380.1 | Symbols:  | 5'-3' exonuclease family protein | chr...    59   6e-09

>AT3G52050.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr3:19305228-19309398 FORWARD LENGTH=425
          Length = 425

 Score =  535 bits (1379), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/395 (68%), Positives = 328/395 (83%), Gaps = 5/395 (1%)

Query: 38  SLQTPKLLRSSRRTPLSKGYCRASLNSPVSATSTAPLVPETRCGPVQLPLGSAEERAANT 97
           SL +P L RS++    S      S N   S ++   +  +     ++ P  S EER A+T
Sbjct: 31  SLISPSLARSAKYYCSSVAVSEFS-NEAASGSTLTSISEDVTPQSIKYPFKS-EERVAST 88

Query: 98  ---DNGRVMLVDGTSVIHRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFL 154
               NGRVML+DGTS+I+RAYYKLLA+L+HGHL HADGN DWVLTIF++LSL+IDVL+FL
Sbjct: 89  AASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFL 148

Query: 155 PSHVVVVFDHDGVPFRHVNNSSKESFTAKGQNFRHNLYPSYKSNRPPTPDTIVQGLQYLK 214
           PSHV VVFDHDGVP+   +NSS    +AKG NFRH LYP+YKSNRPPTPDTIVQGLQYLK
Sbjct: 149 PSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 208

Query: 215 ASIKAMSIKVIEVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAP 274
           ASIKAMSIKVIEVPGVEADDVIGTLA+RS+ AG+KVRVVSPDKDFFQILSPSLRLLR+ P
Sbjct: 209 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 268

Query: 275 RGDQMVSFGVEDFAKRYGGLEPSQFADMIALSGDRSDNIPGVHGIGDVHAVQLISKFGTL 334
           RG +M SFG+EDFAK++G LEP+QF D+IAL+GD+SDNIPGV GIG+VHAV+LIS+FGTL
Sbjct: 269 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 328

Query: 335 ERLLESVDQVKEDRIRKALIANAEQALLSKELALLRSDLPLYMVPFSVRDLSFKKPEDDG 394
           E LL+SVD++KE +I+++LIA+A+QA+LSK+LALLRSDLP Y+VPF  +DL+FKKPED+G
Sbjct: 329 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNG 388

Query: 395 SKFNSLLTAISAYAEGFSADPIIRRAFHLWRKLES 429
            K +SLL AI+ YAEGFSADP+IRRAF LW KLE+
Sbjct: 389 EKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEA 423


>AT3G52050.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr3:19305228-19309398 FORWARD LENGTH=425
          Length = 425

 Score =  535 bits (1379), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/395 (68%), Positives = 328/395 (83%), Gaps = 5/395 (1%)

Query: 38  SLQTPKLLRSSRRTPLSKGYCRASLNSPVSATSTAPLVPETRCGPVQLPLGSAEERAANT 97
           SL +P L RS++    S      S N   S ++   +  +     ++ P  S EER A+T
Sbjct: 31  SLISPSLARSAKYYCSSVAVSEFS-NEAASGSTLTSISEDVTPQSIKYPFKS-EERVAST 88

Query: 98  ---DNGRVMLVDGTSVIHRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFL 154
               NGRVML+DGTS+I+RAYYKLLA+L+HGHL HADGN DWVLTIF++LSL+IDVL+FL
Sbjct: 89  AASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFL 148

Query: 155 PSHVVVVFDHDGVPFRHVNNSSKESFTAKGQNFRHNLYPSYKSNRPPTPDTIVQGLQYLK 214
           PSHV VVFDHDGVP+   +NSS    +AKG NFRH LYP+YKSNRPPTPDTIVQGLQYLK
Sbjct: 149 PSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 208

Query: 215 ASIKAMSIKVIEVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAP 274
           ASIKAMSIKVIEVPGVEADDVIGTLA+RS+ AG+KVRVVSPDKDFFQILSPSLRLLR+ P
Sbjct: 209 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 268

Query: 275 RGDQMVSFGVEDFAKRYGGLEPSQFADMIALSGDRSDNIPGVHGIGDVHAVQLISKFGTL 334
           RG +M SFG+EDFAK++G LEP+QF D+IAL+GD+SDNIPGV GIG+VHAV+LIS+FGTL
Sbjct: 269 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 328

Query: 335 ERLLESVDQVKEDRIRKALIANAEQALLSKELALLRSDLPLYMVPFSVRDLSFKKPEDDG 394
           E LL+SVD++KE +I+++LIA+A+QA+LSK+LALLRSDLP Y+VPF  +DL+FKKPED+G
Sbjct: 329 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNG 388

Query: 395 SKFNSLLTAISAYAEGFSADPIIRRAFHLWRKLES 429
            K +SLL AI+ YAEGFSADP+IRRAF LW KLE+
Sbjct: 389 EKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEA 423


>AT3G52050.3 | Symbols:  | 5'-3' exonuclease family protein |
           chr3:19305159-19309398 FORWARD LENGTH=448
          Length = 448

 Score =  534 bits (1376), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/395 (68%), Positives = 328/395 (83%), Gaps = 5/395 (1%)

Query: 38  SLQTPKLLRSSRRTPLSKGYCRASLNSPVSATSTAPLVPETRCGPVQLPLGSAEERAANT 97
           SL +P L RS++    S      S N   S ++   +  +     ++ P  S EER A+T
Sbjct: 54  SLISPSLARSAKYYCSSVAVSEFS-NEAASGSTLTSISEDVTPQSIKYPFKS-EERVAST 111

Query: 98  ---DNGRVMLVDGTSVIHRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFL 154
               NGRVML+DGTS+I+RAYYKLLA+L+HGHL HADGN DWVLTIF++LSL+IDVL+FL
Sbjct: 112 AASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFL 171

Query: 155 PSHVVVVFDHDGVPFRHVNNSSKESFTAKGQNFRHNLYPSYKSNRPPTPDTIVQGLQYLK 214
           PSHV VVFDHDGVP+   +NSS    +AKG NFRH LYP+YKSNRPPTPDTIVQGLQYLK
Sbjct: 172 PSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 231

Query: 215 ASIKAMSIKVIEVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAP 274
           ASIKAMSIKVIEVPGVEADDVIGTLA+RS+ AG+KVRVVSPDKDFFQILSPSLRLLR+ P
Sbjct: 232 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 291

Query: 275 RGDQMVSFGVEDFAKRYGGLEPSQFADMIALSGDRSDNIPGVHGIGDVHAVQLISKFGTL 334
           RG +M SFG+EDFAK++G LEP+QF D+IAL+GD+SDNIPGV GIG+VHAV+LIS+FGTL
Sbjct: 292 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 351

Query: 335 ERLLESVDQVKEDRIRKALIANAEQALLSKELALLRSDLPLYMVPFSVRDLSFKKPEDDG 394
           E LL+SVD++KE +I+++LIA+A+QA+LSK+LALLRSDLP Y+VPF  +DL+FKKPED+G
Sbjct: 352 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNG 411

Query: 395 SKFNSLLTAISAYAEGFSADPIIRRAFHLWRKLES 429
            K +SLL AI+ YAEGFSADP+IRRAF LW KLE+
Sbjct: 412 EKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEA 446


>AT3G52050.4 | Symbols:  | 5'-3' exonuclease family protein |
           chr3:19305228-19309398 FORWARD LENGTH=413
          Length = 413

 Score =  518 bits (1335), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/395 (67%), Positives = 323/395 (81%), Gaps = 17/395 (4%)

Query: 38  SLQTPKLLRSSRRTPLSKGYCRASLNSPVSATSTAPLVPETRCGPVQLPLGSAEERAANT 97
           SL +P L RS++    S      S N   S ++   +  +     ++ P  S EER A+T
Sbjct: 31  SLISPSLARSAKYYCSSVAVSEFS-NEAASGSTLTSISEDVTPQSIKYPFKS-EERVAST 88

Query: 98  ---DNGRVMLVDGTSVIHRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFL 154
               NGRVML+DGTS+I+RAYYKLLA+L+HGHL HADGN DWVLTIF++LSL+IDVL+FL
Sbjct: 89  AASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFL 148

Query: 155 PSHVVVVFDHDGVPFRHVNNSSKESFTAKGQNFRHNLYPSYKSNRPPTPDTIVQGLQYLK 214
           PSHV VVFDHDG  +R          +AKG NFRH LYP+YKSNRPPTPDTIVQGLQYLK
Sbjct: 149 PSHVAVVFDHDG--YR----------SAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 196

Query: 215 ASIKAMSIKVIEVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAP 274
           ASIKAMSIKVIEVPGVEADDVIGTLA+RS+ AG+KVRVVSPDKDFFQILSPSLRLLR+ P
Sbjct: 197 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 256

Query: 275 RGDQMVSFGVEDFAKRYGGLEPSQFADMIALSGDRSDNIPGVHGIGDVHAVQLISKFGTL 334
           RG +M SFG+EDFAK++G LEP+QF D+IAL+GD+SDNIPGV GIG+VHAV+LIS+FGTL
Sbjct: 257 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 316

Query: 335 ERLLESVDQVKEDRIRKALIANAEQALLSKELALLRSDLPLYMVPFSVRDLSFKKPEDDG 394
           E LL+SVD++KE +I+++LIA+A+QA+LSK+LALLRSDLP Y+VPF  +DL+FKKPED+G
Sbjct: 317 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNG 376

Query: 395 SKFNSLLTAISAYAEGFSADPIIRRAFHLWRKLES 429
            K +SLL AI+ YAEGFSADP+IRRAF LW KLE+
Sbjct: 377 EKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEA 411


>AT3G52050.5 | Symbols:  | 5'-3' exonuclease family protein |
           chr3:19305159-19308931 FORWARD LENGTH=365
          Length = 365

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 253/327 (77%), Gaps = 27/327 (8%)

Query: 38  SLQTPKLLRSSRRTPLSKGYCRASLNSPVSATSTAPLVPETRCGPVQLPLGSAEERAANT 97
           SL +P L RS++    S      S N   S ++   +  +     ++ P  S EER A+T
Sbjct: 54  SLISPSLARSAKYYCSSVAVSEFS-NEAASGSTLTSISEDVTPQSIKYPFKS-EERVAST 111

Query: 98  ---DNGRVMLVDGTSVIHRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFL 154
               NGRVML+DGTS+I+RAYYKLLA+L+HGHL HADGN DWVLTIF++LSL+IDVL+FL
Sbjct: 112 AASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFL 171

Query: 155 PSHVVVVFDHDGVPFRHVNNSSKESFTAKGQNFRHNLYPSYKSNRPPTPDTIVQGLQYLK 214
           PSHV VVFDHDG+                  NFRH LYP+YKSNRPPTPDTIVQGLQYLK
Sbjct: 172 PSHVAVVFDHDGM------------------NFRHTLYPAYKSNRPPTPDTIVQGLQYLK 213

Query: 215 ASIKAMSIKVIEVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAP 274
           ASIKAMSIKVIEVPGVEADDVIGTLA+RS+ AG+KVRVVSPDKDFFQILSPSLRLLR+ P
Sbjct: 214 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 273

Query: 275 RGDQMVSFGVEDFAKRYGGLEPSQFADMIALSGDRSDNIPGVHGIGDVHAVQLISKFGTL 334
           RG +M SFG+EDFAK++G LEP+QF D+IAL+GD+SDNIPGV GIG+VHAV+LIS+FGTL
Sbjct: 274 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 333

Query: 335 ERLLESVDQVKEDRIRKALIANAEQAL 361
           E LL+SVD++KE +I++     +EQ L
Sbjct: 334 ENLLQSVDEIKEGKIKEV----SEQVL 356


>AT1G34380.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:12552839-12554299 REVERSE LENGTH=347
          Length = 347

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 183 KGQNFRHNLYPSYKSNR--PPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLA 240
           +G   R  L PSYK++R  P       +  Q++   ++  ++ V+ + G EADDV+ TL 
Sbjct: 120 EGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEADDVVATLM 179

Query: 241 LRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGD--QMVSFGVEDFAKRYGGLEPSQ 298
            ++V  GY+  + SPDKDF Q++S ++++  + P  D  +   + ++ +  +Y   +P  
Sbjct: 180 EQAVQRGYRAVIASPDKDFKQLISENVQI--VIPLADLRRWSFYTLKHYHAQY-NCDPQS 236

Query: 299 FADMIALSGDRSDNIPGVH----GIGDVHAVQLISKFGTLERLLES 340
                 + GD  D +PG+       G   A++L+ K G+LE LL +
Sbjct: 237 DLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSA 282


>AT1G34380.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:12553297-12554299 REVERSE LENGTH=264
          Length = 264

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 183 KGQNFRHNLYPSYKSNR--PPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLA 240
           +G   R  L PSYK++R  P       +  Q++   ++  ++ V+ + G EADDV+ TL 
Sbjct: 120 EGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEADDVVATLM 179

Query: 241 LRSVDAGYKVRVVSPDKDFFQILSPSLRLL 270
            ++V  GY+  + SPDKDF Q++S +++++
Sbjct: 180 EQAVQRGYRAVIASPDKDFKQLISENVQIV 209