Miyakogusa Predicted Gene

Lj4g3v0510320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0510320.1 Non Chatacterized Hit- tr|B8A8K7|B8A8K7_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,39.46,6e-19,seg,NULL,CUFF.47552.1
         (245 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59680.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   120   8e-28
AT3G59680.1 | Symbols:  | unknown protein; Has 34 Blast hits to ...   110   1e-24

>AT3G59680.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 17 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 34 Blast hits to 34
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:22044175-22045823 FORWARD LENGTH=229
          Length = 229

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 43/213 (20%)

Query: 55  TLSYFQFSLFMQEPRNDSTTRKPWYQRAMQVXXXXXXXXXXXXXPTPNNSTLWKRSMPKS 114
           T S+F F  FMQ+ +  S  RKPWYQRAM V                  +T W R++PKS
Sbjct: 22  TQSFFVFFCFMQDSK-ASPARKPWYQRAMAVARF---------------ATNW-RTIPKS 64

Query: 115 --------------PQVPT-SSPHSK--NKLRKCTSLK-AATSFTRVCLCAPMYSYNEIL 156
                         P V + SS H++  ++LRKC+SLK AA SFTRVCLCAP+  Y+++ 
Sbjct: 65  SSQQQPENFRPSRNPSVNSKSSNHNQIYHQLRKCSSLKVAANSFTRVCLCAPIGPYDDVF 124

Query: 157 KAEVXXXXXXXXXXXXXX-LQTAQEIRTHSARLSTEGITRRSVFRGKSLNDDVLMRRFVI 215
           +  V               ++TA  + T  AR+S +  + R +FRGKSL ++ LMRRFV+
Sbjct: 125 RIHVPPRRSSSYPPSKPLPMETAVAVAT--ARMSVD--SGRRIFRGKSLRENALMRRFVV 180

Query: 216 -EEEAMMQ-RRRNQMEVIRRRSVMRR-KKLGPS 245
            EEEA+M+ R+R+QME++R+R+ MRR KKLGPS
Sbjct: 181 AEEEAIMENRKRDQMEIVRKRNQMRRKKKLGPS 213


>AT3G59680.1 | Symbols:  | unknown protein; Has 34 Blast hits to 34
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:22045218-22045823 FORWARD LENGTH=201
          Length = 201

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 42/195 (21%)

Query: 73  TTRKPWYQRAMQVXXXXXXXXXXXXXPTPNNSTLWKRSMPKS--------------PQVP 118
             RKPWYQRAM V                  +T W R++PKS              P V 
Sbjct: 11  ANRKPWYQRAMAVARF---------------ATNW-RTIPKSSSQQQPENFRPSRNPSVN 54

Query: 119 T-SSPHSK--NKLRKCTSLK-AATSFTRVCLCAPMYSYNEILKAEVXXXXXXXXXXXXXX 174
           + SS H++  ++LRKC+SLK AA SFTRVCLCAP+  Y+++ +  V              
Sbjct: 55  SKSSNHNQIYHQLRKCSSLKVAANSFTRVCLCAPIGPYDDVFRIHVPPRRSSSYPPSKPL 114

Query: 175 -LQTAQEIRTHSARLSTEGITRRSVFRGKSLNDDVLMRRFVI-EEEAMMQ-RRRNQMEVI 231
            ++TA  + T  AR+S +  + R +FRGKSL ++ LMRRFV+ EEEA+M+ R+R+QME++
Sbjct: 115 PMETAVAVAT--ARMSVD--SGRRIFRGKSLRENALMRRFVVAEEEAIMENRKRDQMEIV 170

Query: 232 RRRSVMRR-KKLGPS 245
           R+R+ MRR KKLGPS
Sbjct: 171 RKRNQMRRKKKLGPS 185