Miyakogusa Predicted Gene

Lj4g3v0510150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0510150.1 Non Chatacterized Hit- tr|D7SQZ5|D7SQZ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,29.47,0.00000000000002,coiled-coil,NULL;
PMD,Aminotransferase-like, plant mobile domain,CUFF.47535.1
         (367 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17930.1 | Symbols:  | Aminotransferase-like, plant mobile do...    57   3e-08

>AT1G17930.1 | Symbols:  | Aminotransferase-like, plant mobile
           domain family protein | chr1:6166638-6168432 REVERSE
           LENGTH=478
          Length = 478

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 27/232 (11%)

Query: 38  RLTQLISQRIEATPFKWCLYLEEKISISGILLRKLISRWSPDGGGFRVGTRVIHFTPLDV 97
           +LT+     +E   F W   L   IS++  L+  L+ RW  +   F      +  T  +V
Sbjct: 37  KLTKEQIALVEKAGFGW-FRLVGSISLNNSLISALVERWRRETNTFHFPCGEMTITLDEV 95

Query: 98  CFALGLCISGEP---VERNEEAESQT---------RALFVDDRITLEVIYENLELCMNEG 145
              LGL + G+P   V+  +E  SQ          +     +R+T + + E+   C    
Sbjct: 96  SLILGLAVDGKPVVGVKEKDEDPSQVCLRLLGKLPKGELSGNRVTAKWLKESFAECPKGA 155

Query: 146 RVDDF---CRLYIILAFADFYFPNTS-DFVNMSMFRLLDELDSLHRYNWGMAVHDNLVFS 201
            + +     R Y+I       F  T    +++    L ++ +    Y WG A    L F 
Sbjct: 156 TMKEIEYHTRAYLIYIVGSTIFATTDPSKISVDYLILFEDFEKAGEYAWGAAA---LAFL 212

Query: 202 LNRAAKNFNESKNSEDLWVSGCVAVLQVWAVEHLQM-RPTNTMHHIKFPRVL 252
             +     N S+ S+ + + GC+ +LQ W+  HL + RP  T    +FP  L
Sbjct: 213 YRQIG---NASQRSQSI-IGGCLTLLQCWSYFHLNIDRPKRTTR--QFPLAL 258