Miyakogusa Predicted Gene
- Lj4g3v0510070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0510070.1 Non Chatacterized Hit- tr|Q5GAR1|Q5GAR1_MAIZE
Putative uncharacterized protein OS=Zea mays GN=B9008
,50.62,0.0000000001,seg,NULL; coiled-coil,NULL,CUFF.47529.1
(165 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59800.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 146 5e-36
AT2G43795.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 102 1e-22
AT2G43795.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 101 2e-22
>AT3G59800.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G43795.2); Has 15361 Blast hits to 8061
proteins in 537 species: Archae - 2; Bacteria - 622;
Metazoa - 7561; Fungi - 1246; Plants - 920; Viruses -
49; Other Eukaryotes - 4961 (source: NCBI BLink). |
chr3:22094597-22096174 REVERSE LENGTH=186
Length = 186
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 81/101 (80%)
Query: 1 MGKNQAYKAMQRARLGGASAGPDEVEDGMVDGSFHSPEWHAARLASLKTSHTVTWXXXXX 60
MGKNQAYKAMQR+R+G +SA PDEVEDGMVDGSFH+PEWHAARLASLKT+HT+TW
Sbjct: 1 MGKNQAYKAMQRSRVGSSSAQPDEVEDGMVDGSFHTPEWHAARLASLKTTHTITWEEYKQ 60
Query: 61 XXXXXXXXXXXLEADADRMMREYRAQLDAERSRKLSQGRNH 101
LEAD D++MREYRAQLDAERS KLS+GRN+
Sbjct: 61 KQKEEELKKGELEADTDKLMREYRAQLDAERSLKLSKGRNY 101
>AT2G43795.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G59800.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr2:18141135-18141931
REVERSE LENGTH=170
Length = 170
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 30 VDGSFHSPEWHAARLASLKTSHTVTWXXXXXXXXXXXXXXXXLEADADRMMREYRAQLDA 89
+DGSFHSPEWHAARLASLKT+HT+TW +EAD D++MREYRAQLDA
Sbjct: 1 MDGSFHSPEWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDA 60
Query: 90 ERSRKLSQGRNHS 102
ER+ KLS+GRN+S
Sbjct: 61 ERAMKLSKGRNYS 73
>AT2G43795.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G59800.1); Has 12382 Blast hits to 6798
proteins in 480 species: Archae - 2; Bacteria - 451;
Metazoa - 6443; Fungi - 981; Plants - 703; Viruses - 41;
Other Eukaryotes - 3761 (source: NCBI BLink). |
chr2:18141193-18141931 REVERSE LENGTH=152
Length = 152
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 55/74 (74%)
Query: 30 VDGSFHSPEWHAARLASLKTSHTVTWXXXXXXXXXXXXXXXXLEADADRMMREYRAQLDA 89
+DGSFHSPEWHAARLASLKT+HT+TW +EAD D++MREYRAQLDA
Sbjct: 1 MDGSFHSPEWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDA 60
Query: 90 ERSRKLSQGRNHSG 103
ER+ KLS+GRN+S
Sbjct: 61 ERAMKLSKGRNYSS 74