Miyakogusa Predicted Gene

Lj4g3v0510040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0510040.1 CUFF.47527.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active...    78   2e-15

>AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active 14
           | chr4:10878914-10881697 FORWARD LENGTH=483
          Length = 483

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 54/103 (52%)

Query: 1   MEIPLELMLTISKKLPWMXXXXXXXXXXXXXXXXNPASPETDXXXXXXXXXXYAFDCQEN 60
           MEIPLELM+TI +K PWM                N   PE D          ++FD  ++
Sbjct: 120 MEIPLELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPEIDWDIRLACLLLFSFDRDDH 179

Query: 61  FWQLYGDFLPSADESTSLFIATEVLLQQSQGCDFSPSLSMNTK 103
           FW+LYGDFLP+ADE +SL +ATE  L + Q  D   ++    K
Sbjct: 180 FWRLYGDFLPAADECSSLLLATEEDLAELQDPDLVSTIRQQQK 222