Miyakogusa Predicted Gene

Lj4g3v0506850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0506850.1 tr|I3NMM5|I3NMM5_HEVBR 50S ribosomal protein L33A
OS=Hevea brasiliensis GN=RPL33A PE=3 SV=1,81.03,1e-17,Zn-binding
ribosomal proteins,Ribosomal protein, zinc-binding domain; SUBFAMILY
NOT NAMED,NULL; FAMI,CUFF.47544.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18790.1 | Symbols:  | Ribosomal protein L33 family protein |...    88   1e-18
AT3G06320.1 | Symbols:  | Ribosomal protein L33 family protein |...    88   1e-18

>AT5G18790.1 | Symbols:  | Ribosomal protein L33 family protein |
          chr5:6266324-6266500 REVERSE LENGTH=58
          Length = 58

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)

Query: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKP-RQFTEKLEFRKFDPRVNKHVLFTEAKMK 57
          MGDK+KK  MF++LVSAAGTGFFYVKRK  +   EKLEFRK+DPRVN+HVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58


>AT3G06320.1 | Symbols:  | Ribosomal protein L33 family protein |
          chr3:1914940-1915116 FORWARD LENGTH=58
          Length = 58

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)

Query: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKP-RQFTEKLEFRKFDPRVNKHVLFTEAKMK 57
          MGDK+KK  MF++LVSAAGTGFFYVKRK  +   EKLEFRK+DPRVN+HVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58