Miyakogusa Predicted Gene

Lj4g3v0496570.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0496570.2 Non Chatacterized Hit- tr|C0PEM8|C0PEM8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55,9e-17,seg,NULL;
coiled-coil,NULL,CUFF.47499.2
         (391 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18490.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    89   6e-18
AT4G18490.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    89   7e-18

>AT4G18490.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: shoot, shoot
           apex, embryo, flower, seed; EXPRESSED DURING: petal
           differentiation and expansion stage, E expanded
           cotyledon stage; Has 30201 Blast hits to 17322 proteins
           in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:10204388-10208197 FORWARD LENGTH=755
          Length = 755

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 136/289 (47%), Gaps = 44/289 (15%)

Query: 105 NKVKFQETNTSTKDVNIL----SSQVNPSSLTKKTAGITTQISVISQPEASGKESFQKSR 160
           + +K Q  NT T++ +IL    SS+++ SSLT+K          +S   +SG ES QK +
Sbjct: 489 DHLKLQAKNT-TREKSILQINISSKLDASSLTQK----------LSNHLSSGVESLQKPK 537

Query: 161 ITAVEGNKLSAVKVCKTTPALSSLKTLRNIGANTVLATSSHQKEANSLVNSQHNKETQGI 220
           +     N L   K+      L ++KT R IG N    +S+ Q E +S ++ + N E    
Sbjct: 538 L-----NSLGRPKLGNIMADLRAVKTQRTIGGNKDQPSSAVQPEFSSSISKERNTEA--- 589

Query: 221 TPLKN----DHQTDSGDNKKLSNPF-LKRKTIEDSEADLTSLRP-LKRLS---QXXXXXX 271
            P+K      H       + L  P  LKRK + D +AD  SL+P LKRLS   +      
Sbjct: 590 -PVKKSSEIHHLAPRDKTQTLHCPSSLKRKAL-DEDAD-RSLKPQLKRLSMSPRENRNVE 646

Query: 272 XXXXXXXXXXXXXXXXXXFLKYYSTSGVESPS------EIKVTEVEIPASVLMEDNSSVE 325
                               K       ESP        I +  +EIP   + E+  ++E
Sbjct: 647 ELTHRAVQGKFSSQESRIDTKTTKEPVKESPQTKSHYQNINMANLEIP---ITENADNIE 703

Query: 326 KAEAYMKELEDICNMXXXXXXXXXXXXVRAIVNNNNLLMLNHPIYDEEI 374
           KAEAY KELE+ICN+            VRA+V+NN LLMLNHP+Y+++I
Sbjct: 704 KAEAYTKELENICNILKKKHEEAKELLVRAVVDNNKLLMLNHPLYEDQI 752


>AT4G18490.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:10204388-10208197 FORWARD LENGTH=756
          Length = 756

 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 136/289 (47%), Gaps = 44/289 (15%)

Query: 105 NKVKFQETNTSTKDVNIL----SSQVNPSSLTKKTAGITTQISVISQPEASGKESFQKSR 160
           + +K Q  NT T++ +IL    SS+++ SSLT+K          +S   +SG ES QK +
Sbjct: 490 DHLKLQAKNT-TREKSILQINISSKLDASSLTQK----------LSNHLSSGVESLQKPK 538

Query: 161 ITAVEGNKLSAVKVCKTTPALSSLKTLRNIGANTVLATSSHQKEANSLVNSQHNKETQGI 220
           +     N L   K+      L ++KT R IG N    +S+ Q E +S ++ + N E    
Sbjct: 539 L-----NSLGRPKLGNIMADLRAVKTQRTIGGNKDQPSSAVQPEFSSSISKERNTEA--- 590

Query: 221 TPLKN----DHQTDSGDNKKLSNPF-LKRKTIEDSEADLTSLRP-LKRLS---QXXXXXX 271
            P+K      H       + L  P  LKRK + D +AD  SL+P LKRLS   +      
Sbjct: 591 -PVKKSSEIHHLAPRDKTQTLHCPSSLKRKAL-DEDAD-RSLKPQLKRLSMSPRENRNVE 647

Query: 272 XXXXXXXXXXXXXXXXXXFLKYYSTSGVESPS------EIKVTEVEIPASVLMEDNSSVE 325
                               K       ESP        I +  +EIP   + E+  ++E
Sbjct: 648 ELTHRAVQGKFSSQESRIDTKTTKEPVKESPQTKSHYQNINMANLEIP---ITENADNIE 704

Query: 326 KAEAYMKELEDICNMXXXXXXXXXXXXVRAIVNNNNLLMLNHPIYDEEI 374
           KAEAY KELE+ICN+            VRA+V+NN LLMLNHP+Y+++I
Sbjct: 705 KAEAYTKELENICNILKKKHEEAKELLVRAVVDNNKLLMLNHPLYEDQI 753